View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17498_low_9 (Length: 314)

Name: NF17498_low_9
Description: NF17498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17498_low_9
NF17498_low_9
[»] chr7 (1 HSPs)
chr7 (9-314)||(23984284-23984587)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 23984284 - 23984587
Alignment:
Q  9 caaagtccaagatgagggaagacatggcctgtctaataaggccaaaactatatcaaataaaagagggatgacgtattcatagtcaaaaaagtctgccatg 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23984284 caaagtccaagatgagggaagacatggcctgtctaatgaggccaaaactatatcaaataaaagagggatgacgtattcacagtcaaaaaagtctgccatg 23984383  T
Q  109 ataactatactcataagatacttacttataaggttttgagttgtaaatataattttatttgc-aaggggctgtgtagaccaaatcttcaattgatagata 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||    
T  23984384 ataactatactcataagatacttacttataaggttttgacttgtaaatataattttatttgcaaaggggctgtgtagaccaaatcttcaatt----gata 23984479  T
Q  208 gaggcat-aaaaaataattaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa 306  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23984480 gaggcataaaaaaaaaattaattcacaacaatttgcattattttatatcaatattattcaataagtaaactgaaagtgatcgatatgaaaacaacaagaa 23984579  T
Q  307 ccacacta 314  Q
    ||||||||    
T  23984580 ccacacta 23984587  T

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