View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17499_high_1 (Length: 1418)
Name: NF17499_high_1
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 1111; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1111; E-Value: 0
Query Start/End: Original strand, 1 - 1269
Target Start/End: Complemental strand, 41802116 - 41800864
Alignment:
| Q |
1 |
aatcatgttcgccagcataaccattatgcattcattcaatcaatacagttagaaatgaagaaataaaagcatcttgatatgcatacaacttcactatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41802116 |
aatcatgttcgccagcataaccattatgcattcattcaatcaatacagttagaaatgaagaaataaaagcatcttgatatgcatacagcttcactatgtg |
41802017 |
T |
|
| Q |
101 |
catcaagattcaacggaaaatgagtatctattttgagtgagacacatgccaaatactgggagatgtgcaaccagccaaccatgatagaaagaagcaaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41802016 |
catcaagattcaacggaaaatgagtatctattttgagtgagaaacatgccaaatactgggagatgtgcaacca--------tgatagaaagaagcaaaga |
41801925 |
T |
|
| Q |
201 |
cacgaatcaaatttaatttggtttatctttaccacatgaaagcagttatcttttttgcaaatcattatgttcatatcgacaaacacctcagtagcaacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801924 |
cacgaatcaaatttaatttggtttatctttaccacatgaaagcagttatcttttttgcaaatcattatgttcatatcgacaaacacctcagtagcaacaa |
41801825 |
T |
|
| Q |
301 |
cagttgggacattagggagtccggggaatcatcacactagaccaagaacaactacatagttgacttggacaccacattttaacccaaaacattaagacat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801824 |
cagttgggacattagggagtccggggaatcatcacactagaccaagaacaactacataattgacttggacaccacattttaacccaaaacattaagacat |
41801725 |
T |
|
| Q |
401 |
tgggtatatggatcctctgacacttgatacaccaacagcaactacaacaatataaaggtcacatgcatggcaaagaatccgcaagagaatgcagcaaggt |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801724 |
tgggt----ggatcctctgacacttgatacaccaacagcaactacaacactataaaggtcacatgcatggcaaagaatccgcaagagaatgcagcaaggt |
41801629 |
T |
|
| Q |
501 |
ggtgatatcatgcaaaaacaaagacatgaaagcttaggcaaaacgacagggtgcaaatgtaaatataaatgatgtgagaactacaaaatgtgatcctttt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801628 |
ggtgatatcatgcaaaaacaaagacatgaaagcttaggcaaaacgacagggtgcaaatgtaaatataaatgatgtgagaactacaaaatgtgatcctttt |
41801529 |
T |
|
| Q |
601 |
atatatcctctcttggctcttctcctcctcattccctgtcatgctacctattcccttactgtgttctttaatgaatcactagagactcttgtaatacttt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801528 |
atatatcctctcttggctcttctcctcctcattccctgtcatgctacatattcccttactgtgttctttaatgaatcactagagactcttgtaatacttt |
41801429 |
T |
|
| Q |
701 |
ttcttttgtgaagaatac-acatacagttcaaacactacnnnnnnnnncttctttttcctatgttcctccttgcagcaacacattgcaaattacatcgca |
799 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801428 |
ttcttttgtgaagaatacaacatacagttcaaacaccacttttttttt-ttttttttcctatgttcctccttgcagcaacacattgcaaattacatcgca |
41801330 |
T |
|
| Q |
800 |
aatgtcgtagcatgtttatttacttggaacagcaaaaactataacataccttccaatattcccttgcagcctcacatcacaaatgttatagctgttaatt |
899 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801329 |
aatgttgtagcatgtttatttacttggaacagcaaaaactataacataccttccaatattcccttgcagcctcacatcacaaatgttatagctgttaatt |
41801230 |
T |
|
| Q |
900 |
tggaacaccaaaaaatctataatccagatcgctaattctgtttcacaattccagcttacttctgtaagtgtaacatgcaatccaataaatccatccacgg |
999 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801229 |
tggaacacc-acaaatctataatccagatcgctaattctgtttcacaattccagcttacttctgtaagtgtaacatgcaatccaataaatccatccacta |
41801131 |
T |
|
| Q |
1000 |
caaactctttaacctctagtcccctaactttccaactttagaatgttacaattataagtttgaaacctttcctttccggaaaatgagcaaacggggaaaa |
1099 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41801130 |
caaactctttaacctctagtcccctaactttccaactttagaatgttacaattataagtttgaaacctttcctttccggaaaatgaggaaacggggaaaa |
41801031 |
T |
|
| Q |
1100 |
attcagcgcctcttcgcattgagcctaatgtcccaagagaactacaaacacatttactcaacattaattcttcctaacccttcaagctagatatatttaa |
1199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41801030 |
attcagcgcctcttcgcattgagcctaatgtcccaagagaactacaaacacatttactcaacattaattcttcctaacccttcaagctagatatatttaa |
41800931 |
T |
|
| Q |
1200 |
aattaaaaatttgtaacaatttagccactaatactattgactactgagaaagttattagacaacacaatc |
1269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41800930 |
aattaaaaatttgtaacaatttagccactaatactattgactactgagaaag---ttagacaacacaatc |
41800864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 1353 - 1400
Target Start/End: Complemental strand, 41800780 - 41800733
Alignment:
| Q |
1353 |
acaaacaggtaagaggcaagcataaaaagaaaaacattgtgagacaag |
1400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41800780 |
acaaacaggtaagaggcaagcataaaaagaaaaacattgtgagacaag |
41800733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 45395698 - 45395748
Alignment:
| Q |
368 |
gacaccacattttaacccaaaacattaagacattgggtatatggatcctct |
418 |
Q |
| |
|
||||||||| | | |||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
45395698 |
gacaccacactcttacccaaaacattaagacaatgggtttatggatcctct |
45395748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 5974684 - 5974625
Alignment:
| Q |
342 |
ccaagaacaactacatagttgacttggacaccacattttaacccaaaacattaagacatt |
401 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5974684 |
ccaagaacaactacataagtgagatggacattacattttaaccaaaaacattaagacatt |
5974625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 30737655 - 30737713
Alignment:
| Q |
360 |
ttgacttggacaccacattttaacccaaaacattaagacattgggtatatggatcctct |
418 |
Q |
| |
|
|||| ||||||||| || ||||||||||||| ||| |||||||||| ||||| |||||| |
|
|
| T |
30737655 |
ttgagttggacaccgcactttaacccaaaaccttatgacattgggtttatgggtcctct |
30737713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 368 - 409
Target Start/End: Original strand, 23140563 - 23140604
Alignment:
| Q |
368 |
gacaccacattttaacccaaaacattaagacattgggtatat |
409 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
23140563 |
gacaccacattttgacccaaaaccttaagacattaggtatat |
23140604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 365 - 418
Target Start/End: Complemental strand, 40991869 - 40991816
Alignment:
| Q |
365 |
ttggacaccacattttaacccaaaacattaagacattgggtatatggatcctct |
418 |
Q |
| |
|
||||||||||||| |||||||||||| || || |||||||| ||||| |||||| |
|
|
| T |
40991869 |
ttggacaccacatcttaacccaaaaccttgaggcattgggtttatgggtcctct |
40991816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 368 - 411
Target Start/End: Original strand, 41752933 - 41752976
Alignment:
| Q |
368 |
gacaccacattttaacccaaaacattaagacattgggtatatgg |
411 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
41752933 |
gacaccacattttgacccaaaaccttaagacattaggtatatgg |
41752976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 2891865 - 2891915
Alignment:
| Q |
368 |
gacaccacattttaacccaaaacattaagacattgggtatatggatcctct |
418 |
Q |
| |
|
|||| |||| ||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
2891865 |
gacatcacactttaacccaaaaccttaagacattaggtttatggatcctct |
2891915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University