View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_high_10 (Length: 280)
Name: NF17499_high_10
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 19790007 - 19789744
Alignment:
| Q |
16 |
attggtattaataatacaatacaggtttgatttgtcactttatattgacgaagtgtacatttatgtacttgtaaattgagtattttgttatacatttcaa |
115 |
Q |
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| T |
19790007 |
attggtattaataatacaacacaggtttgatttgtcactttatattgacgaagtgtacatttatgtacttgtaaattgagtattttgttatacatttcaa |
19789908 |
T |
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| Q |
116 |
catactttgggtttcctttcgattcagaagtcttattttaaatcttttgcacttgcagactggtctttcagtttatgctcatcaagggcaagtgagtcca |
215 |
Q |
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| T |
19789907 |
catactt-gggtttcctttctattcagaagtcttattttaaaccttttgcacttgcagactggtctttcagtttatgctcatcaagggcaagtgagtcca |
19789809 |
T |
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| Q |
216 |
aaggatattgaattctgtcgaaatcgtagtcctgacacaacaaaattagaccttgagacacccac |
280 |
Q |
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| T |
19789808 |
aaggatattgaattctgtcgaaatcgtagtcctgacacaacaaaattagaccttgagacacccac |
19789744 |
T |
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