View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17499_high_7 (Length: 340)

Name: NF17499_high_7
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17499_high_7
NF17499_high_7
[»] chr4 (10 HSPs)
chr4 (71-340)||(40086344-40086613)
chr4 (87-134)||(11315632-11315679)
chr4 (87-139)||(19842633-19842685)
chr4 (87-134)||(11320688-11320735)
chr4 (87-134)||(46263834-46263881)
chr4 (87-134)||(46264644-46264691)
chr4 (90-135)||(55601351-55601396)
chr4 (90-134)||(55604022-55604066)
chr4 (87-134)||(5338092-5338139)
chr4 (71-134)||(49404072-49404135)
[»] scaffold0025 (1 HSPs)
scaffold0025 (87-134)||(3774-3821)
[»] chr2 (5 HSPs)
chr2 (87-134)||(18133923-18133970)
chr2 (87-134)||(16026757-16026804)
chr2 (87-134)||(16027467-16027514)
chr2 (87-134)||(41426310-41426357)
chr2 (87-134)||(43599791-43599838)
[»] chr1 (15 HSPs)
chr1 (87-134)||(28419817-28419864)
chr1 (87-134)||(36322502-36322549)
chr1 (87-134)||(36323228-36323275)
chr1 (87-140)||(36087796-36087849)
chr1 (87-134)||(3772541-3772588)
chr1 (87-134)||(3773291-3773338)
chr1 (87-134)||(9362706-9362753)
chr1 (87-134)||(33554988-33555035)
chr1 (87-134)||(36096916-36096963)
chr1 (87-134)||(45216446-45216493)
chr1 (87-133)||(15623843-15623889)
chr1 (87-133)||(45215650-45215696)
chr1 (87-134)||(9359885-9359932)
chr1 (87-134)||(15622326-15622373)
chr1 (89-134)||(28419047-28419092)
[»] chr8 (5 HSPs)
chr8 (87-134)||(7888867-7888914)
chr8 (87-134)||(10635326-10635373)
chr8 (87-134)||(39116761-39116808)
chr8 (87-134)||(39117483-39117530)
chr8 (87-140)||(13101866-13101919)
[»] chr7 (10 HSPs)
chr7 (87-134)||(3312160-3312207)
chr7 (87-134)||(36965678-36965725)
chr7 (87-134)||(39139880-39139927)
chr7 (87-134)||(42665997-42666044)
chr7 (87-134)||(46293710-46293757)
chr7 (87-134)||(46294427-46294474)
chr7 (87-134)||(31043763-31043810)
chr7 (87-134)||(36966317-36966364)
chr7 (87-134)||(42665282-42665329)
chr7 (174-223)||(46972566-46972615)
[»] chr6 (6 HSPs)
chr6 (87-134)||(8980370-8980417)
chr6 (87-134)||(13219814-13219861)
chr6 (87-134)||(17408527-17408574)
chr6 (87-134)||(17409339-17409386)
chr6 (87-134)||(28535671-28535718)
chr6 (89-134)||(8981089-8981134)
[»] chr5 (9 HSPs)
chr5 (87-134)||(23357672-23357719)
chr5 (87-134)||(23358957-23359004)
chr5 (87-134)||(25433244-25433291)
chr5 (87-134)||(25435056-25435103)
chr5 (87-134)||(42833366-42833413)
chr5 (175-226)||(8618681-8618732)
chr5 (87-134)||(8619311-8619358)
chr5 (87-134)||(24116449-24116496)
chr5 (174-226)||(8619454-8619506)
[»] chr3 (6 HSPs)
chr3 (87-134)||(2892127-2892174)
chr3 (87-134)||(2892837-2892884)
chr3 (87-134)||(41496263-41496310)
chr3 (87-134)||(41496986-41497033)
chr3 (87-134)||(54035707-54035754)
chr3 (89-134)||(41804988-41805033)
[»] scaffold0347 (2 HSPs)
scaffold0347 (87-134)||(13208-13255)
scaffold0347 (87-130)||(14705-14748)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 71 - 340
Target Start/End: Complemental strand, 40086613 - 40086344
Alignment:
Q  71 aatatttgttgtattatagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgttaaatttgnnnnnnnnnnnnnaattatnnnnnnnn-gc 169  Q
    |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||             || |||         ||    
T  40086613 aatatttgttgtcttttagtgtgccacgtggcgtgtcatgattgtcccacgtggcacaccgttaaatttgtttttctttttttaactatacaaaaaaagc 40086514  T
Q  170 gcacggaccaataccaaaattggatgaaatagtaaggactaaacacacatttaaaccatttaaatattgatccacgatggaccattaccatttatatgta 269  Q
     ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40086513 acactgaccgataccaaaattggatgaaatagtaaggactaaacacacatttaaaccatttaaatattgatccacgatggaccattacgatttatatgta 40086414  T
Q  270 gaacccaccccaccattcgttttttcatataattattaagattcagtaggaggcttttggtattatgggtc 340  Q
    |||||||||||||||||||| ||||||||||||||  ||||| |||||| |||||||||| ||||||||||    
T  40086413 gaacccaccccaccattcgt-ttttcatataattaacaagatacagtagtaggcttttggaattatgggtc 40086344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 11315679 - 11315632
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  11315679 tagtgtgccacgtggcatgtcatgattgggccacgtggcacaccgtta 11315632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 19842633 - 19842685
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgttaaattt 139  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||| ||||    
T  19842633 tagtgtgccacgtggcgtgtcatgattggtccacgtggcacaccgttatattt 19842685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 11320688 - 11320735
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  11320688 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 11320735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 46263881 - 46263834
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  46263881 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 46263834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 46264644 - 46264691
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  46264644 tagtgtgccacgtggcgtgtcatgattggaccacgtggcacaccgtta 46264691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 55601396 - 55601351
Alignment:
Q  90 tgtgccacgtggcatgtcatgattgtcccacgtggcacaccgttaa 135  Q
    ||||||||||||||||||||||||| |||||||| |||||| ||||    
T  55601396 tgtgccacgtggcatgtcatgattgacccacgtgccacaccattaa 55601351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 55604022 - 55604066
Alignment:
Q  90 tgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||    
T  55604022 tgtgccacgtggcgtgttatgattggcccacgtggcacaccgtta 55604066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 5338139 - 5338092
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||| ||||||||||||||    
T  5338139 tagtgtgccacgtggcgtgtcatgattgggccatgtggcacaccgtta 5338092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 49404072 - 49404135
Alignment:
Q  71 aatatttgttgtattatagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||| |||| || |||||||||||||||| ||  |||||||  ||||||||||||||||||    
T  49404072 aatattttttgtcttttagtgtgccacgtggcgtggaatgattggtccacgtggcacaccgtta 49404135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 3821 - 3774
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  3821 tagtgtgccacgtggcatgtcatgattgggccacgtggcacaccgtta 3774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 18133923 - 18133970
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  18133923 tagtgtgccacgtggcatgtcatgattgggccacgtggcacaccgtta 18133970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 16026804 - 16026757
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  16026804 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 16026757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 16027467 - 16027514
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||   |||||||||||||||||    
T  16027467 tagtgtgccacgtggcgtgtcatgattgggtcacgtggcacaccgtta 16027514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 41426357 - 41426310
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||| ||||||| |||||||||||  ||||||||||||||||||    
T  41426357 tagtgtgcaacgtggcgtgtcatgattgggccacgtggcacaccgtta 41426310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 43599838 - 43599791
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||   |||||||||||||||||    
T  43599838 tagtgtgccacgtggcgtgtcatgattgggtcacgtggcacaccgtta 43599791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 28419817 - 28419864
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  28419817 tagtgtgccacgtggcatgtcatgattgggccacgtggcacaccgtta 28419864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 36322549 - 36322502
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  36322549 tagtgtgccacgtggcatgtcatgattgggccacgtggcacaccgtta 36322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 36323228 - 36323275
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  36323228 tagtgtgccacgtggcatgtcatgattgggccacgtggcacaccgtta 36323275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 36087849 - 36087796
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgttaaatttg 140  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||| ||||    
T  36087849 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgttaattttg 36087796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 3772588 - 3772541
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  3772588 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 3772541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 3773291 - 3773338
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  3773291 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 3773338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 9362706 - 9362753
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  9362706 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 9362753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 33555035 - 33554988
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  33555035 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 33554988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 36096916 - 36096963
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  36096916 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 36096963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 45216446 - 45216493
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  45216446 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 45216493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 15623843 - 15623889
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtt 133  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||    
T  15623843 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtt 15623889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 45215696 - 45215650
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtt 133  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||    
T  45215696 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtt 45215650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 9359932 - 9359885
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||| ||||| |||||||||||  ||||||||||||||||||    
T  9359932 tagtgtgccatgtggcgtgtcatgattgggccacgtggcacaccgtta 9359885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 15622373 - 15622326
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||| |||| |||||||||||  ||||||||||||||||||    
T  15622373 tagtgtgccacatggcgtgtcatgattgggccacgtggcacaccgtta 15622326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 28419092 - 28419047
Alignment:
Q  89 gtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||| |||||||||||  ||||||| ||||||||||    
T  28419092 gtgtgccacgtggcgtgtcatgattgggccacgtgacacaccgtta 28419047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 7888914 - 7888867
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  7888914 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 7888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 10635373 - 10635326
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  10635373 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 10635326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 39116808 - 39116761
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  39116808 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 39116761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 39117483 - 39117530
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  39117483 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 39117530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 13101919 - 13101866
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgttaaatttg 140  Q
    ||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||    
T  13101919 tagtgtgtcacgtggcgtgtcatgattggcccacatggcacaccgttaattttg 13101866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 3312160 - 3312207
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  3312160 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 3312207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 36965725 - 36965678
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  36965725 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 36965678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 39139927 - 39139880
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  39139927 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 39139880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 42665997 - 42666044
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  42665997 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 42666044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 46293757 - 46293710
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  46293757 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 46293710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 46294427 - 46294474
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  46294427 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 46294474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 31043763 - 31043810
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||||||| |||||||  ||||||||||||| ||||    
T  31043763 tagtgtgccacgtggcatgtaatgattggtccacgtggcacacagtta 31043810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 36966317 - 36966364
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||| ||||||||||| |||||||||||  ||||||||||||||||||    
T  36966317 tagtatgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 36966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 42665329 - 42665282
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||| ||||||||||    
T  42665329 tagtgtgccacgtggcgtgtcatgattgggccacgtgacacaccgtta 42665282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 46972566 - 46972615
Alignment:
Q  174 ggaccaataccaaaattggatgaaatagtaaggactaaacacacatttaa 223  Q
    ||||||||||||||||||| |||||  | | |||||||||||||||||||    
T  46972566 ggaccaataccaaaattgggtgaaagtgcagggactaaacacacatttaa 46972615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 8980417 - 8980370
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  8980417 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 8980370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 13219814 - 13219861
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  13219814 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 13219861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 17408574 - 17408527
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  17408574 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 17408527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 17409339 - 17409386
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  17409339 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 17409386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 28535718 - 28535671
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  28535718 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 28535671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 8981089 - 8981134
Alignment:
Q  89 gtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||    
T  8981089 gtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 8981134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 23357719 - 23357672
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  23357719 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 23357672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 23358957 - 23359004
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  23358957 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 23359004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 25433291 - 25433244
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  25433291 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 25433244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 25435056 - 25435103
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  25435056 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 25435103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 42833413 - 42833366
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  42833413 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 42833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 8618732 - 8618681
Alignment:
Q  175 gaccaataccaaaattggatgaaatagtaaggactaaacacacatttaaacc 226  Q
    |||||||| |||||||||||||||  | | ||||||||||||||||||||||    
T  8618732 gaccaatatcaaaattggatgaaagtgcagggactaaacacacatttaaacc 8618681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 8619311 - 8619358
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    ||||||||||| |||| |||||||||||  ||||||||||||||||||    
T  8619311 tagtgtgccacatggcgtgtcatgattggtccacgtggcacaccgtta 8619358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 24116449 - 24116496
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  | ||||||||||||||||    
T  24116449 tagtgtgccacgtggcgtgtcatgattgggcgacgtggcacaccgtta 24116496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 226
Target Start/End: Original strand, 8619454 - 8619506
Alignment:
Q  174 ggaccaataccaaaattggatgaaatagtaaggactaaacacacatttaaacc 226  Q
    ||||||||||||||||||| |||||  | | ||||||||| ||||||||||||    
T  8619454 ggaccaataccaaaattgggtgaaagtgcagggactaaacgcacatttaaacc 8619506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 2892174 - 2892127
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  2892174 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 2892127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 2892837 - 2892884
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  2892837 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 2892884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 41496310 - 41496263
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  41496310 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 41496263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 41496986 - 41497033
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  ||||||||||||||||||    
T  41496986 tagtgtgccacgtggcgtgtcatgattgggccacgtggcacaccgtta 41497033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 54035754 - 54035707
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||| ||||| |||||||||||  ||||||||||||||||||    
T  54035754 tagtgtgccatgtggcgtgtcatgattgggccacgtggcacaccgtta 54035707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 41805033 - 41804988
Alignment:
Q  89 gtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||| |||||||||||  ||||||| ||||||||||    
T  41805033 gtgtgccacgtggcgtgtcatgattgggccacgtgacacaccgtta 41804988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 13208 - 13255
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacaccgtta 134  Q
    |||||||||||||||| |||||||||||  |||| |||||||||||||    
T  13208 tagtgtgccacgtggcgtgtcatgattgggccacatggcacaccgtta 13255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 14705 - 14748
Alignment:
Q  87 tagtgtgccacgtggcatgtcatgattgtcccacgtggcacacc 130  Q
    ||||||||||||||||||||||||||||  |||||| |||||||    
T  14705 tagtgtgccacgtggcatgtcatgattgatccacgtagcacacc 14748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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