View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_high_8 (Length: 316)
Name: NF17499_high_8
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 19959723 - 19959414
Alignment:
| Q |
7 |
aaaataagataaaaataagcaataatttaggattcacttgtgcatcaaaacagtgtcattgaggaagaaaacaagcaacgtgggagaaacacaaaaccgt |
106 |
Q |
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| T |
19959723 |
aaaataagataaaaataagcaataatttaggattcacttgtgcatcaaaacagtgtcattaaggaagaaaacaagcaacgtgggagaaacacaaaaccgt |
19959624 |
T |
|
| Q |
107 |
gtttctttttctgtgccacctgttattttatactggaaatttgttcatccattcataaactgaaaattaannnnnnnnaaa---aatatccgacttaaga |
203 |
Q |
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| T |
19959623 |
gtttctttttcggtgccacctgttattttatactagaaatctgttcatccattcataaactgaaaattaattttttttaaactcgatatccgacctaaga |
19959524 |
T |
|
| Q |
204 |
ttcgacctaaaattgatgtaaaattagaaaccattcatttaagatttcttattgattccagataattgcagggacatagtaagatgaatcataggatgtt |
303 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19959523 |
ttcgacataaaatcgatgtaaaattagaaaccattcatttaagatttcttattgattccagataattgcagggacatagtaagatgaatcataggatgtt |
19959424 |
T |
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| Q |
304 |
acctcgtata |
313 |
Q |
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|||||||||| |
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| T |
19959423 |
acctcgtata |
19959414 |
T |
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