View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17499_low_12 (Length: 309)
Name: NF17499_low_12
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 42 - 298
Target Start/End: Original strand, 27581370 - 27581624
Alignment:
| Q |
42 |
tcttaccacattcataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaact |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
27581370 |
tcttaccacatccataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaggcttcaatctataaaccttgtccagaaact |
27581469 |
T |
|
| Q |
142 |
tccattgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttg |
241 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27581470 |
tccattgtgtacattggattttgattt--tcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttg |
27581567 |
T |
|
| Q |
242 |
catcaacccgaccaaattgtttcaaatattcaatatcatcgagaattttgtacctat |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27581568 |
catcaacccgaccaaattgtttcaaatattcaatatcatggagaattttgtacctat |
27581624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 34985168 - 34984912
Alignment:
| Q |
43 |
cttaccacattcataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaactt |
142 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||| ||||||||||||| ||||||||| ||||||||| |
|
|
| T |
34985168 |
cttaccacatccataagtaattcaactagtttagttggacttatcttaatcaatgccttgtcccgagaagcttcaatctgcaaaccttgttcaaaaactt |
34985069 |
T |
|
| Q |
143 |
ccattgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgc |
242 |
Q |
| |
|
||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| |
|
|
| T |
34985068 |
ccattgtatacattgaattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacttaacaatctccaataatgttgc |
34984969 |
T |
|
| Q |
243 |
atcaacccgaccaaattgtttcaaatattcaatatcatcgagaattttgtacctatg |
299 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
34984968 |
atcaacacagccaaattgtttcaaatattcaaaatcatcgagaatttcgtacctatg |
34984912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 43 - 299
Target Start/End: Original strand, 27542478 - 27542736
Alignment:
| Q |
43 |
cttaccacattcataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaactt |
142 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
27542478 |
cttaccacatccataagtatttcaactagtttagttggacttatcttaatcaatgccatgttccgaaaagcttcaatctgcaaaccttgtccaaaaactt |
27542577 |
T |
|
| Q |
143 |
ccattgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgc |
242 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27542578 |
tcattgtgtacattggattttggtttcgacacaaatcaaaactaggtaaagtttaaaattctccaacttcaaccaacctattaatctccattaatgttgc |
27542677 |
T |
|
| Q |
243 |
atcaacccgaccaaattgtttcaaatattca--atatcatcgagaattttgtacctatg |
299 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
27542678 |
atcaacccgaccatattgtttcaaattttcaatatatcatcgagaatttcgtacctatg |
27542736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 27583237 - 27582979
Alignment:
| Q |
43 |
cttaccacattcataagtaattcaactagtttagttggaattatcttaaccaa--tgccatgtcccacgaagcttcaatctataaaccttgtccaaaaac |
140 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| | ||| |||| ||| ||||||||| | |||||||||||| | |||||||||||||||| |
|
|
| T |
27583237 |
cttaccacatccataagtaattcatctagtttagttgaacatatattaatcaacatgccatgtctcgagaagcttcaatcaacaaaccttgtccaaaaat |
27583138 |
T |
|
| Q |
141 |
ttccattgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgtt |
240 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |
|
|
| T |
27583137 |
ttccattgtgtacattggattttggtttcgacacaaattaaaactaggtaaagtttgaagctctccaactccaaccaacctaacaatctccattgatgtt |
27583038 |
T |
|
| Q |
241 |
gcatcaacccgaccaaattgtttcaaatattcaatatcatcgagaattttgtacctatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| |
|
|
| T |
27583037 |
gcatcaacccgaccaaattgtttcaaatattaaatattatcgagaatttcgtacttatg |
27582979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 109 - 299
Target Start/End: Complemental strand, 27543845 - 27543655
Alignment:
| Q |
109 |
gaagcttcaatctataaaccttgtccaaaaacttccattgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaa |
208 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27543845 |
gaagcttcaatctgcaaaccatgtccaaaaacttccattgtgtacattggattttggtttcgacacaaatcaaaactaggtaaagtttgaagctctccaa |
27543746 |
T |
|
| Q |
209 |
cttcaaccaacctaataatctccattaatgttgcatcaacccgaccaaattgtttcaaatattcaatatcatcgagaattttgtacctatg |
299 |
Q |
| |
|
|| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27543745 |
ctccaagcaacctaacaatctccattaatgttgcatcaacccaaccaaattgtttcaaatattcaatatcatcgagaatttcgtacctatg |
27543655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 47 - 299
Target Start/End: Complemental strand, 34980717 - 34980465
Alignment:
| Q |
47 |
ccacattcataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaacttccat |
146 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||||||| ||||||||||||||||||||| | |
|
|
| T |
34980717 |
ccacatccataagtaattcaactagtttagttggtcttatcttaatcaattccatgtcccgagaagcttcaatcggaaaaccttgtccaaaaacttcctt |
34980618 |
T |
|
| Q |
147 |
tgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgcatca |
246 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||| | ||| ||| | ||||| | ||||||| |
|
|
| T |
34980617 |
tgttgacattggattttgatttcgacacaaatcaaaactaggtatagtttcaagatctccaacttcaaccatcttaacaattgcaattaacgatgcatca |
34980518 |
T |
|
| Q |
247 |
acccgaccaaattgtttcaaatattcaatatcatcgagaattttgtacctatg |
299 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| ||| ||||||| ||||||||| |
|
|
| T |
34980517 |
acctgactaaattgtttcaaatattcaatataatcaagaatttcgtacctatg |
34980465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 43 - 299
Target Start/End: Complemental strand, 34993123 - 34992867
Alignment:
| Q |
43 |
cttaccacattcataagtaattcaactagtttagttggaattatcttaaccaatgccatgtcccacgaagcttcaatctataaaccttgtccaaaaactt |
142 |
Q |
| |
|
||||||| || |||||||| ||||||||||||||||||| ||||||||| ||||||||| |||| ||| ||||||||| ||||||||||||||||| | |
|
|
| T |
34993123 |
cttaccagatccataagtacttcaactagtttagttggacttatcttaatcaatgccatatcccgtgaaccttcaatctgcaaaccttgtccaaaaacgt |
34993024 |
T |
|
| Q |
143 |
ccattgtgtacattggattttgatttcgtcacaaatcaaaactaggtaaagtttgaagctctccaacttcaaccaacctaataatctccattaatgttgc |
242 |
Q |
| |
|
|| |||| ||||||||| ||| |||| ||| ||||||||||||| | |||||||| |||||||||||||||| | ||| || ||||||||||| ||| |
|
|
| T |
34993023 |
cctttgttgacattggatcttggattcgacacgaatcaaaactaggcagtgtttgaagatctccaacttcaaccatcttaacaagctccattaatgatgc |
34992924 |
T |
|
| Q |
243 |
atcaacccgaccaaattgtttcaaatattcaatatcatcgagaattttgtacctatg |
299 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
34992923 |
atcaacctgactaaattgtttcaaatattcaatattatcgagaatttcgtacctatg |
34992867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 27543896 - 27543858
Alignment:
| Q |
43 |
cttaccacattcataagtaattcaactagtttagttgga |
81 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27543896 |
cttaccacatccataagtaattcaactagtttagttgga |
27543858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University