View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_16 (Length: 253)
Name: NF17499_low_16
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2517986 - 2517759
Alignment:
| Q |
10 |
aagaatataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacaga |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517986 |
aagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacaga |
2517887 |
T |
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| Q |
110 |
tgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattttgtagtcaagaatgcacttgatgtgagtatg |
209 |
Q |
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| T |
2517886 |
tgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattttgtagtcaagaatgcacttgatgtgagtatg |
2517787 |
T |
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| Q |
210 |
atatcaaggccttaagttatgatgtttt |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2517786 |
atatcaaggccttaagttatgatgtttt |
2517759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 2513769 - 2513601
Alignment:
| Q |
10 |
aagaatataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacaga |
109 |
Q |
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| T |
2513769 |
aagattataaagaaggtgatatcgtgtgggggataactaattgggaagagtacagcttgatccctgcagcacaaatacattttaaaattgagcacactga |
2513670 |
T |
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| Q |
110 |
tgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttattacgttgattt |
178 |
Q |
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| T |
2513669 |
tgttcctctttcctactatacaggaattcttggtatgtgatccacaatttcaattttttatgttgattt |
2513601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 2507109 - 2506970
Alignment:
| Q |
10 |
aagaatataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacaga |
109 |
Q |
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|||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| || ||||||| |||||||||||| || || || |
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| T |
2507109 |
aagattataaggaaggtgatatagtgtgggggataactaattgggaagagtacagcttgatccctgcggcacaaatacatttcaaaattgagcatactga |
2507010 |
T |
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| Q |
110 |
tgttcctctttcgtactatactggaattcttggtatgtat |
149 |
Q |
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| T |
2507009 |
tgttcctctttcctactatactggaattctaggtatgtat |
2506970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 2428453 - 2428603
Alignment:
| Q |
15 |
tataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttc |
114 |
Q |
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| T |
2428453 |
tataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcatacagatgtcc |
2428552 |
T |
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| Q |
115 |
ctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
165 |
Q |
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| T |
2428553 |
cactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
2428603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 1458746 - 1458896
Alignment:
| Q |
15 |
tataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttc |
114 |
Q |
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|||||| ||| ||||||||| ||||| | ||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||| || |||||||| | |
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| T |
1458746 |
tataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcatacagatgtcc |
1458845 |
T |
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| Q |
115 |
ctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
165 |
Q |
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| T |
1458846 |
cactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
1458896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 2498171 - 2498019
Alignment:
| Q |
15 |
tataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgttc |
114 |
Q |
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|||||||||||||||||||| ||||| || ||| |||||||||||||||||| ||||| || |||||||||||||||||||||| ||||| ||||| | |
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| T |
2498171 |
tataaggaaggtgatttagtttggggattctgtaaatgggaagagtacagcttggtcccttcatctcaaatacttttcaaaattgagcacactgatgtcc |
2498072 |
T |
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| Q |
115 |
ctctttcgtactatactggaattcttggtatgtattcaacaatttcaatttat |
167 |
Q |
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| T |
2498071 |
cactttcctactatactggaatactcggtatgttttcaacaatttcaatttat |
2498019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Complemental strand, 50703555 - 50703459
Alignment:
| Q |
15 |
tataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctcaaatacttttcaaaattgaacacacagatgt |
112 |
Q |
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|||||||||||||||| ||| ||||| || ||| |||||||||||||||||| | ||| | |||||||||||||||||||||| ||||| ||||| |
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| T |
50703555 |
tataaggaaggtgattaagtttggggattctgtaaatgggaagagtacagcttggtacctt-atctcaaatacttttcaaaattgagcacactgatgt |
50703459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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