View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17499_low_17 (Length: 249)

Name: NF17499_low_17
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17499_low_17
NF17499_low_17
[»] chr2 (3 HSPs)
chr2 (1-204)||(30782259-30782462)
chr2 (1-61)||(30245501-30245561)
chr2 (5-77)||(30061157-30061231)
[»] scaffold1178 (1 HSPs)
scaffold1178 (78-185)||(2225-2332)
[»] chr6 (3 HSPs)
chr6 (78-151)||(14434466-14434539)
chr6 (79-129)||(4479821-4479871)
chr6 (138-179)||(20737891-20737932)
[»] chr8 (4 HSPs)
chr8 (78-129)||(32850563-32850614)
chr8 (79-129)||(37177997-37178047)
chr8 (78-129)||(37173706-37173757)
chr8 (79-129)||(32854858-32854908)
[»] chr3 (1 HSPs)
chr3 (78-129)||(39163943-39163994)
[»] chr1 (1 HSPs)
chr1 (78-169)||(2009522-2009615)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 30782462 - 30782259
Alignment:
Q  1 tacaaaataaacattactttcgcaggggtttgaactgaaatcatcatagcaactgcatcaggtcgtaattgaggttcgtgttaaatgataatttgtaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30782462 tacaaaataaacattactttcgcaggggtttgaactgaaatcatcatagcaactgcatcaggtcgtaattgaggttcgtgttaaatgataatttgtaatt 30782363  T
Q  101 ttccatatttctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagagggtcatttaatattcctagggttttattagaactt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30782362 ttccatattcctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagagggtcatttaatattcctagggttttattagaactt 30782263  T
Q  201 tcta 204  Q
    ||||    
T  30782262 tcta 30782259  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30245561 - 30245501
Alignment:
Q  1 tacaaaataaacattactttcgcaggggtttgaactgaaatcatcatagcaactgcatcag 61  Q
    |||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  30245561 tacaaagtaaacattactttagcaggggtttaaactgaagtcatcatagcaactgcatcag 30245501  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 30061231 - 30061157
Alignment:
Q  5 aaataaacattactttc--gcaggggtttgaactgaaatcatcatagcaactgcatcaggtcgtaattgaggttc 77  Q
    ||||||||||||||||   |||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||    
T  30061231 aaataaacattactttttagcaggggtttaaaccgaagtcatcatagcagctgcatcaggtcgtaattgaggttc 30061157  T

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Target: scaffold1178 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 2332 - 2225
Alignment:
Q  78 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctgcaagttctagagagggtcatttaata 177  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||| || || ||||||||||| | |||||| |||||  |||||||||||    
T  2332 gtgttaaatgataatttgtaattttccatattcctaggttccttaatatatctaaaagtctattcatgtatcagtaagttccagagaatgtcatttaata 2233  T
Q  178 ttcctagg 185  Q
    ||||||||    
T  2232 ttcctagg 2225  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 14434466 - 14434539
Alignment:
Q  78 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtatctg 151  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||  | ||||||||||    
T  14434466 gtgttaaatgataatttgtaattttccatattcctaggttcattaatgtatctagaagtctctccatgtatctg 14434539  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 4479871 - 4479821
Alignment:
Q  79 tgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 129  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4479871 tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 4479821  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 20737932 - 20737891
Alignment:
Q  138 cattcatgtatctgcaagttctagagagggtcatttaatatt 179  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  20737932 cattcatgtatctgcaagttctagatagggtcatttaatatt 20737891  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 32850614 - 32850563
Alignment:
Q  78 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 129  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32850614 gtgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 32850563  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 37178047 - 37177997
Alignment:
Q  79 tgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 129  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37178047 tgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 37177997  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 37173757 - 37173706
Alignment:
Q  78 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 129  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  37173757 gtgttaaatgataatttgtaatttttcatattcctaggttccttaatgtatc 37173706  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 32854908 - 32854858
Alignment:
Q  79 tgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 129  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  32854908 tgttaaatgataatttgaaattttccatattcctaggttccttaatgtatc 32854858  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 39163994 - 39163943
Alignment:
Q  78 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatc 129  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39163994 gtgttaaatgataatttgtaattttccatattcctaggttccttaatgtatc 39163943  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 2009522 - 2009615
Alignment:
Q  78 gtgttaaatgataatttgtaattttccatatttctaggttccttaatgtatctagaaatccattcatgtat---ctgcaagttctagagagggtc 169  Q
    |||||||||||||||| | |||||| |||||| ||| ||||| |||||||||||||| | |||||||||||   || ||||||||| ||||||||    
T  2009522 gtgttaaatgataatt-gaaatttttcatattcctaagttccctaatgtatctagaagttcattcatgtattgactacaagttctaaagagggtc 2009615  T

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