View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_19 (Length: 227)
Name: NF17499_low_19
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 40086170 - 40086394
Alignment:
| Q |
1 |
ccaaagttgcttcctgaagagacggtagcgacatgctgtcgaaatgttgagcagctccaatggtaatttgtggaaaaaggggttgacactctggcggacg |
100 |
Q |
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| T |
40086170 |
ccaaagttgcttcctgaagagacggtagcgacatgctgtcgaaatgttgagcagctccaatggtaatttgtggaaaaaggggttgacactctggcggacg |
40086269 |
T |
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| Q |
101 |
gtactaggaaatgtgccgctggagctactggtctcaagcaaccaaactccaattacaacaagaagtatgacaatgacccataattccaaaagcctactac |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40086270 |
gtactaggaaatttgccgctggagctactggtctcaagcaaccaaactccaattacaacaagaagtatgacaatgacccataattccaaaagcctactac |
40086369 |
T |
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| Q |
201 |
tgtatcttgttaattatatgaaaaa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
40086370 |
tgtatcttgttaattatatgaaaaa |
40086394 |
T |
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