View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_2 (Length: 616)
Name: NF17499_low_2
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 12 - 598
Target Start/End: Complemental strand, 7837155 - 7836569
Alignment:
| Q |
12 |
tgagatgaaggtgcaagatgtggtggtggataaagattagtagtagtattatggttagggtgtgaattttgaggtgggttattgaagactaatgtgtgaa |
111 |
Q |
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| T |
7837155 |
tgagaagaaggtgcaagatgtggtggtggataaagattagtagtagtattatggttagggtgtgaattttgaggtgggttattgaagactaatgtgtgaa |
7837056 |
T |
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| Q |
112 |
cttgaggtggtggtggtggagttggtgaagaagaagaagaatctctattgtaacctaaagttgtttgtgacatctttgtttccattaacaaagacctaat |
211 |
Q |
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| T |
7837055 |
cttgaggtggtggtggtggagttggtgaagaagaagaagaatctctattgtaacctaaagttgtttgtgacatctttgtttccattaacaaagacctaat |
7836956 |
T |
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| Q |
212 |
taacctttgtgtgtttgagatctatattagaataatatatatatctctcttaaactataatctgcatatttttatggtttaattatggttgtggatgcta |
311 |
Q |
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| T |
7836955 |
taacctttgtgtgtttgagatctatattagaataatatatatatctctcttaaactataatctgcatatttttgtggtttaattatggttgtggatgcta |
7836856 |
T |
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| Q |
312 |
aaccctaattcatccccatccaatactccaggaatat-agctactaaagaaagaagatatatatgattactagcagtagcaaagatagtaagatactatt |
410 |
Q |
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| T |
7836855 |
aaccctaattcatccccatccaatactccaggaatataagctactaaagaaagaagatatatatgattactagcagtagcaaagatagtaagatactatt |
7836756 |
T |
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| Q |
411 |
attctttaatgtgtgattattctgataaatgacaatcccaccaaccgaatttcactaatcaatcctattctcagaaatctaaggaagtgctttaactgtt |
510 |
Q |
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| T |
7836755 |
attctttaatgtgtgattattctgataaatgataatcccaccaaccgaatttcactaatcaatcctattctcagaaatctaaggaagtgctttaactgtt |
7836656 |
T |
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| Q |
511 |
tatataggaccactaatgggaatattgttctaattttannnnnnnngggaaaataattttcggataaaggaggaaatagagaatatat |
598 |
Q |
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| T |
7836655 |
tatataggaccactaatgggaatattgttctaatttt-ttttttttgggaaaataattttcggataaaggaggaaatagagaatatat |
7836569 |
T |
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