View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_3 (Length: 564)
Name: NF17499_low_3
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 29052758 - 29052362
Alignment:
| Q |
18 |
gttagaaactaacaagtagaaaaagaaacattcatttgttttatgatgaccttactacatgagaaccatgtagattataacttgatataaggagataaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29052758 |
gttagaaactaacaagtagaaaaagaaacattcatttgttttatgatgaccttactacatgagaaccatgtagattataacttcatataaggagataaaa |
29052659 |
T |
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| Q |
118 |
cattataaagataaataaatactttggattctatttccaaatgtttatcttcaagctttttctttggattcactactctcgaaccatcgttatcaacttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052658 |
tattataaagataaataaatactttggattctatttccaaatatttatcttcaagctttttctttggattcactactctcgaaccatcgttatcaacttc |
29052559 |
T |
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| Q |
218 |
aactggtatttctaacctgatatatagaaatcaacagttgatatgtcattttacccaaaggcttctctaacacaatagacatcttgtatttttagggagg |
317 |
Q |
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| T |
29052558 |
aactggtatttctaacctgatatatagaaatcaaaagttgatatgtcattttacccaatggcttctctaacacaatatacatcttgtatttttagggagg |
29052459 |
T |
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| Q |
318 |
catatattttgcaatttgtatatttgctatggactatggtgggtgaatctgtaagtatccgaattcagaaatcctacagtagcaataaaatttgtgattg |
417 |
Q |
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| T |
29052458 |
catatattttgcaatttgtatatttgctatggactat----ggtgaatctctaagtatccgaattcagaaatcctacagtagcaataaaatttgtgattg |
29052363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 29049493 - 29049269
Alignment:
| Q |
19 |
ttagaaactaacaagtagaaaaagaaacattcatttgtttt-atgatgaccttact-acatgagaaccatgtagattataacttgatataaggagataaa |
116 |
Q |
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||||||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||||| | ||| ||||||||||| |
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| T |
29049493 |
ttagaaactgacaagtagaaaaagaaacattcatttttttttatgatgaccttacttacatgagaaccatgcagattataacctcatagaaggagataaa |
29049394 |
T |
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| Q |
117 |
acattataaagataaataaatactttggattctatttccaaatgtttatcttcaagctttttctttggattcactactctcgaaccatcgttatcaactt |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
29049393 |
acattataaagataaataaataccttggattctatttccaaatattcatcttcaagctttttccttggattcactactctcgaaccatcgttatccactt |
29049294 |
T |
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| Q |
217 |
caactggtatttctaacctgatata |
241 |
Q |
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| T |
29049293 |
caactggtatttctaacctgatata |
29049269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 447 - 550
Target Start/End: Complemental strand, 29052333 - 29052230
Alignment:
| Q |
447 |
gactaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatcactctatcaataggcttactgggaattattttttggtcac |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29052333 |
gactaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatccctctatcaataggcttactgggaattattttttggtcac |
29052234 |
T |
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| Q |
547 |
ggtc |
550 |
Q |
| |
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|||| |
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| T |
29052233 |
ggtc |
29052230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 449 - 546
Target Start/End: Complemental strand, 29059101 - 29059008
Alignment:
| Q |
449 |
ctaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatcactctatcaataggcttactgggaattattttttggtcac |
546 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||| ||||| || |||||||||||||||||| | ||||||||||||||||| |
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| T |
29059101 |
ctaatctataactgaccaattctacataattcactcttttgaagg----gtctctgtccctctatcaataggcttacaagtaattattttttggtcac |
29059008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 349
Target Start/End: Complemental strand, 29059276 - 29059183
Alignment:
| Q |
258 |
atatgtcattttacccaaaggcttctctaacacaatagacatcttgta--tttttagggaggcatatattttgcaatttgtatatttgctatgg |
349 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| || |||||| ||||||||||||||| ||||| |
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| T |
29059276 |
atatgtcattttacccaaaggcttctctaccacaataggtatcttatatttttttagggagacacgtattttacaatttgtatatttggtatgg |
29059183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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