View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_4 (Length: 548)
Name: NF17499_low_4
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 529
Target Start/End: Complemental strand, 36289267 - 36288739
Alignment:
| Q |
1 |
agaactattcttcagacaatttccttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289267 |
agaactattcttcagacaatttccttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaa |
36289168 |
T |
|
| Q |
101 |
ccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaacttttcacat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289167 |
ccatcatctccaccagaactattaccacctctctcactcttcaatggagtcatcctcttacacccttttgaccaattcccactattccaacttttcacat |
36289068 |
T |
|
| Q |
201 |
cccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289067 |
cccttggttcaaacccttttatgcatttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttatt |
36288968 |
T |
|
| Q |
301 |
aggctcacttagtatcacattccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcacta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36288967 |
aggctcacttagtatcacattccattctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagttggaaccttaccttatcacta |
36288868 |
T |
|
| Q |
401 |
ttttccaatgcttcatatacaaaatacctttctccattatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtacacctgtga |
500 |
Q |
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| T |
36288867 |
ttttccaatgcttcatatacaaaatacctttctccagtatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtacacctgtga |
36288768 |
T |
|
| Q |
501 |
aaactctaccatcccaataaccacttctc |
529 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
36288767 |
aaactctaccatcccaataaccacttctc |
36288739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 424
Target Start/End: Original strand, 12096373 - 12096773
Alignment:
| Q |
24 |
cttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactatt |
123 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||| |
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| T |
12096373 |
cttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaatcctttgcaccaaaaaaccatcttctccaccaaaactatt |
12096472 |
T |
|
| Q |
124 |
accacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatg |
223 |
Q |
| |
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|| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
12096473 |
actgcctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactatcccaacttttcacatcctttggctcaaacccttttatg |
12096572 |
T |
|
| Q |
224 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaggctcacttagtatcacattcc |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | |
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| T |
12096573 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaagctcactttgtaacacattgc |
12096672 |
T |
|
| Q |
324 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatatacaaa |
423 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||| |||||||||||||||||||||| ||| |
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| T |
12096673 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatcttatccctattttccaatgcttcatataaaaa |
12096772 |
T |
|
| Q |
424 |
a |
424 |
Q |
| |
|
| |
|
|
| T |
12096773 |
a |
12096773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 463 - 529
Target Start/End: Original strand, 12096769 - 12096835
Alignment:
| Q |
463 |
aaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttctc |
529 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12096769 |
aaaaagatatcttcctgtcatatttggcacacctgtgaaaactctaccatcccaataaccacttctc |
12096835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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