View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_5 (Length: 538)
Name: NF17499_low_5
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 29052732 - 29052362
Alignment:
| Q |
18 |
aacattcatttgttttatgatgaccttactacatgagaaccatgtagattataacttgatataaggagataaaacattataaagataaataaatactttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29052732 |
aacattcatttgttttatgatgaccttactacatgagaaccatgtagattataacttcatataaggagataaaatattataaagataaataaatactttg |
29052633 |
T |
|
| Q |
118 |
gattctatttccaaatgtttatcttcaagctttttctttggattcactactctcgaaccatcgttatcaacttcaactggtatttctaacctgatatata |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052632 |
gattctatttccaaatatttatcttcaagctttttctttggattcactactctcgaaccatcgttatcaacttcaactggtatttctaacctgatatata |
29052533 |
T |
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| Q |
218 |
gaaatcaacagttgatatgtcattttacccaaaggcttctctaacacaatagacatcttgtatttttagggaggcatatattttgcaatttgtatatttg |
317 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052532 |
gaaatcaaaagttgatatgtcattttacccaatggcttctctaacacaatatacatcttgtatttttagggaggcatatattttgcaatttgtatatttg |
29052433 |
T |
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| Q |
318 |
ctatggactatggtgggtgaatctgtaagtatccgaattcagaaatcctacagtagcaataaaatttgtgattga |
392 |
Q |
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| T |
29052432 |
ctatggactat----ggtgaatctctaagtatccgaattcagaaatcctacagtagcaataaaatttgtgattga |
29052362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 29049468 - 29049269
Alignment:
| Q |
18 |
aacattcatttgtttt-atgatgaccttact-acatgagaaccatgtagattataacttgatataaggagataaaacattataaagataaataaatactt |
115 |
Q |
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| T |
29049468 |
aacattcatttttttttatgatgaccttacttacatgagaaccatgcagattataacctcatagaaggagataaaacattataaagataaataaatacct |
29049369 |
T |
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| Q |
116 |
tggattctatttccaaatgtttatcttcaagctttttctttggattcactactctcgaaccatcgttatcaacttcaactggtatttctaacctgatata |
215 |
Q |
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|||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29049368 |
tggattctatttccaaatattcatcttcaagctttttccttggattcactactctcgaaccatcgttatccacttcaactggtatttctaacctgatata |
29049269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 421 - 524
Target Start/End: Complemental strand, 29052333 - 29052230
Alignment:
| Q |
421 |
gactaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatcactctatcaataggcttactgggaattattttttggtcac |
520 |
Q |
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| T |
29052333 |
gactaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatccctctatcaataggcttactgggaattattttttggtcac |
29052234 |
T |
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| Q |
521 |
ggtc |
524 |
Q |
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|||| |
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| T |
29052233 |
ggtc |
29052230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 423 - 520
Target Start/End: Complemental strand, 29059101 - 29059008
Alignment:
| Q |
423 |
ctaatctataactgaccaattctacataatccactcttttaaaggcctcatctctatcactctatcaataggcttactgggaattattttttggtcac |
520 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |||| ||||| || |||||||||||||||||| | ||||||||||||||||| |
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| T |
29059101 |
ctaatctataactgaccaattctacataattcactcttttgaagg----gtctctgtccctctatcaataggcttacaagtaattattttttggtcac |
29059008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 323
Target Start/End: Complemental strand, 29059276 - 29059183
Alignment:
| Q |
232 |
atatgtcattttacccaaaggcttctctaacacaatagacatcttgta--tttttagggaggcatatattttgcaatttgtatatttgctatgg |
323 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| || |||||| ||||||||||||||| ||||| |
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| T |
29059276 |
atatgtcattttacccaaaggcttctctaccacaataggtatcttatatttttttagggagacacgtattttacaatttgtatatttggtatgg |
29059183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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