View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_6 (Length: 489)
Name: NF17499_low_6
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 205 - 437
Target Start/End: Complemental strand, 21153777 - 21153544
Alignment:
| Q |
205 |
tttcgattcatttaaaaatcaagtactagattctgattcccttaaaaatcaagtaccaaattcctcaaacaaaactacatctacaaaataagtggtcttc |
304 |
Q |
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| T |
21153777 |
tttcgattcacttaaaaatcaagtactaaattccgattcacttaaaaatcaagtatcaaattcctcaaacaaaactacatctacaaaataagtggtcttc |
21153678 |
T |
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| Q |
305 |
cacttcaaggatccttcgacaccgcacacaattcgaattcacttcatacaaca-acactatctttctagataagttcccacgagtaggtaaacgattaag |
403 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| | |||| |
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| T |
21153677 |
cacttcaaggatccttcgacaccgcacacaatccgaattcacttcatacaacacacactatccttctaaataagttcccacgagtaggtaaactactaag |
21153578 |
T |
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| Q |
404 |
aattagttgacatgagaaaatttgcaccttttgt |
437 |
Q |
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| T |
21153577 |
aattagttgacatgagaaaatttgcaccttttgt |
21153544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 21153991 - 21153820
Alignment:
| Q |
17 |
ataaaccactttcaagagatagctttgatatcttcaaatatctcttccatgtgtggaatctttgaagacaagataatctaactccaagcctcctatattt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| |
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| T |
21153991 |
ataaaccactttcaagagatagctttgatatcttcaaatatctcttccatgtgtggaatttttgaagagaagataatctaactccaagccttctatattt |
21153892 |
T |
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| Q |
117 |
ttcaaataattgcatgccgaataaaaattcaccatttacaatattttttgttcaaagatgattaaacgcaat |
188 |
Q |
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| T |
21153891 |
ttcaaataattgcacgccgaataaaaattcaccatttacgatattttttgttcaaagatgattaaacgcaat |
21153820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 30468943 - 30468866
Alignment:
| Q |
234 |
attctgattcccttaaaaatcaagtaccaaattcctcaaacaaaactacatctacaaaataagtggtcttccacttca |
311 |
Q |
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|||||||||| |||||||||||| ||||| | || |||||||||||||| ||||||||| ||||| || |||||| |
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| T |
30468943 |
attctgattcacttaaaaatcaaataccattcccttccaacaaaactacatcgacaaaataaatggtcctctacttca |
30468866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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