View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_7 (Length: 462)
Name: NF17499_low_7
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 446
Target Start/End: Complemental strand, 25828664 - 25828229
Alignment:
| Q |
13 |
gcatagggccaagtacttttatttccattcttgatgaacctt--ggcttgttaatggtgacagtattgatggtaatatgccaaacacataccatgttcat |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||||| | |
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| T |
25828664 |
gcataggaccaagtacttttatttccattcttgatgaaccttttggcttgt-aatggtgaccgtattgatggtaatatgccaaacatataccatgtttgt |
25828566 |
T |
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| Q |
111 |
aatttttgtgttgctagtccgatggttcctatgcttaaggtatggaaccatgatttgattcatcaagtttttagccgga-tattgcttttagtattttgc |
209 |
Q |
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||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||||| |
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| T |
25828565 |
aatttttctgttgctagtctgatggttcctacgcgaaaggtatggaaccatgatttgattcatcatgtttttagcccgaatattgcttctagtattttgc |
25828466 |
T |
|
| Q |
210 |
gatatatttgattaggtgtcatatgacaaattgatttggaaagctgaaaaggatggtgattattatgtgaaaagtgtatataggctttgtatggaatggt |
309 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| | | |
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| T |
25828465 |
gatatatttgattaggtgtcagatgataaattgatttggaaagctgaaaaggatggcgagtattatgtaaaaagtgtatataggctttgtatggaaggtt |
25828366 |
T |
|
| Q |
310 |
tggtggatacatcgcatcattgaaggccaggtttctgagccagatttggtggttaaaggttctcctgaaaatcaaacacttagtttggagaatgtgttga |
409 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||||| || ||||||||| || |
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| T |
25828365 |
tggtggatacatcgcatctttgaagaccaggtttctgagccggatatggcggttagaggttctcctgaaaatcaaacacttagtctgaagaatgtgtcga |
25828266 |
T |
|
| Q |
410 |
ggttgtttgcctacacgagttcgtttacgggataaag |
446 |
Q |
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| T |
25828265 |
ggttgtttgcctacacgagttcgtttacaggataaag |
25828229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 318 - 446
Target Start/End: Complemental strand, 25669885 - 25669757
Alignment:
| Q |
318 |
acatcgcatcattgaaggccaggtttctgagccagatttggtggttaaaggttctcctgaaaatcaaacacttagtttggagaatgtgttgaggttgttt |
417 |
Q |
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||||| |||||||||||| ||||||| |||||| ||||||| ||||||| ||||||| ||||||||||||||||||| || |||||||| ||| | |||| |
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| T |
25669885 |
acatcacatcattgaaggtcaggtttatgagccggatttggcggttaaaagttctcccgaaaatcaaacacttagttcggggaatgtgtcgagatcgttt |
25669786 |
T |
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| Q |
418 |
gcctacacgagttcgtttacgggataaag |
446 |
Q |
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| T |
25669785 |
gcctacacgagttcgtttacaggataaag |
25669757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 381
Target Start/End: Original strand, 24888227 - 24888411
Alignment:
| Q |
199 |
tagtattttgcgatatatttgattaggtgtcatatgacaaattgatttggaaagctgaaaaggatggtgattattatgtg--------aaaagtgtatat |
290 |
Q |
| |
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|||||||||||||||| ||||||| || |||||||||||||||||||||| |||||||| | ||| ||| || || |||||||| ||| |
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| T |
24888227 |
tagtattttgcgatatgtttgatt------cagatgacaaattgatttggaaagcagaaaaggacgatgagtatgatatgtaaaaataaaaagtgtctat |
24888320 |
T |
|
| Q |
291 |
aggctttgtatggaatggttggtggatacatcgcatcattgaaggccaggtttctgagccagatttggtggttaaaggttctcctgaaaat |
381 |
Q |
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| T |
24888321 |
aggctttgtatggaaggttcggtggatacatcgcattttcaaagaccaggtttctgggctggatttagcggttaaaggttttcccgaaaat |
24888411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 446
Target Start/End: Complemental strand, 25472515 - 25472452
Alignment:
| Q |
383 |
aaacacttagtttggagaatgtgttgaggttgtttgcctacacgagttcgtttacgggataaag |
446 |
Q |
| |
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||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
25472515 |
aaacacttagtctgaagaatgtgtcttggttgtttgcctacacgagttcgtttacaggataaag |
25472452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Complemental strand, 25430610 - 25430563
Alignment:
| Q |
279 |
aaaagtgtatataggctttgtatggaatggttggtggatacatcgcat |
326 |
Q |
| |
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| T |
25430610 |
aaaagtgtatatgggctttgtatggaaggttcggtggatacatcgcat |
25430563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 25430656 - 25430617
Alignment:
| Q |
205 |
tttgcgatatatttgattaggtgtcatatgacaaattgat |
244 |
Q |
| |
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| T |
25430656 |
tttgcgatatgtttgattaggtgtcagatgacaaattgat |
25430617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 14230003 - 14230099
Alignment:
| Q |
226 |
tgtcatatgacaaattgatttggaaagctgaaaaggatggtgattattatgtgaaaagtgtatataggctttgtatggaatggttggtggatacatc |
322 |
Q |
| |
|
||||| ||||||||||||| || |||||||||||||||||||| |||| | | ||||||| |||| |||||| ||| || | ||| |||||||||| |
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| T |
14230003 |
tgtcagatgacaaattgatctgaaaagctgaaaaggatggtgagtattctctaaaaagtgcgtataagctttgcatgtaaggtttgatggatacatc |
14230099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 25983546 - 25983597
Alignment:
| Q |
254 |
tgaaaaggatggtgattattatgtgaaaagtgtatataggctttgtatggaa |
305 |
Q |
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| T |
25983546 |
tgaaaaggatggtgagtattatgtaaaaagtgtgtacaagctttgtatggaa |
25983597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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