View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17499_low_8 (Length: 432)
Name: NF17499_low_8
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 45361980 - 45362382
Alignment:
| Q |
18 |
aaggggttgtttagaatggacaataacactcttctccatttcaacactcccaaacactttggttatgggaatccctcttctcaaaggtatgtacggtggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45361980 |
aaggggttgtttagaatggacaataacactcttctccatttcaacactcccaaacactttggttatgggaatccctcttctcaaatgtatgtacggtggt |
45362079 |
T |
|
| Q |
118 |
gaattttctgggagtttgatggtacaaattgtggtccttcagtgtattatttggtacacgttgatgttgttcatgtttgagtttagaggagcaagaacgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
45362080 |
gaattttctgggagtttgatggtacaaattgtggtccttcagtgtattatttggtacacgttgattttgttcatgtttgagtttagaggagcaagaatgc |
45362179 |
T |
|
| Q |
218 |
ttatctcagaacagtttccagacactgctggtaccattgtttccattcatgttgactctgatgtgatgtcgttggatgatggaagacagtgtttggaaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45362180 |
ttatctcagaacagtttccagacactgctggtaccattgtttccattcatgttgactctgatgtgatgtcgttggatgatggaagacagtgtttggaaac |
45362279 |
T |
|
| Q |
318 |
agaagctgtaatcaaagaagatgggaagcttcatgttatagtgaggagatcaaatgcttcaagaaggtctcattctcagtctcatacaacacctcgagct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45362280 |
agaagctgtaatcaaagaagatgggaagcttcatgttatagtgaggagatcaaatgcttcaagaaggtctcattctcagtctcatacaacacctcgagct |
45362379 |
T |
|
| Q |
418 |
tca |
420 |
Q |
| |
|
||| |
|
|
| T |
45362380 |
tca |
45362382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 25038800 - 25039157
Alignment:
| Q |
18 |
aaggggttgtttagaatggacaataacactcttctccatttcaacactcccaaacactttggttatgggaatccctcttctcaaaggtatgtacggtggt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || | |||||||| ||||||||||||||||||||||| ||| | || ||||| ||||| |||| |
|
|
| T |
25038800 |
aaggggttgtttagaatggactataacactcttttcactctcaacacttccaaacactttggttatgggaattcctttacttaaaggaatgta---tggt |
25038896 |
T |
|
| Q |
118 |
gaattttctgggagtttgatggtacaaattgtggtccttcagtgtattatttggtacacgttgatgttgttcatgtttgagtttagaggagcaagaacgc |
217 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| || ||||| ||||| |||||||| || |||||| | |||||||||||||||||||||||||| | |
|
|
| T |
25038897 |
gaattttcaggtagtttaatggtacaaattgttgttcttcaatgtatcatttggtatactttgatgcttttcatgtttgagtttagaggagcaaggttgt |
25038996 |
T |
|
| Q |
218 |
ttatctcagaacagtttccagacactgctggtaccattgtttccattcatgttgactctgatgtgatgtcgttggatgatggaagacagtgtttggaaac |
317 |
Q |
| |
|
| || || ||||||||||| |||||||||||| |||||||||| || |||||||| |||||||| ||||| ||||||| | ||| || |||||||| |
|
|
| T |
25038997 |
tgatttctgaacagtttcctgacactgctggttccattgtttcaatccatgttgattctgatgtcatgtcattggatggtagaacac---cattggaaac |
25039093 |
T |
|
| Q |
318 |
agaagctgtaatcaaagaagatgggaagcttcatgttatagtgaggagatcaaatgcttcaaga |
381 |
Q |
| |
|
|| |||| ||||||||||||||| || |||||| | | || || | |||||||||||||||| |
|
|
| T |
25039094 |
tgatgctgaaatcaaagaagatggtaaacttcatatcactgttagaaaatcaaatgcttcaaga |
25039157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 33102204 - 33102330
Alignment:
| Q |
47 |
tcttctccatttcaacactcccaaacactttggttatgggaatccctcttctcaaaggtatgtacggtggtgaattttctgggagtttgatggtacaaat |
146 |
Q |
| |
|
||||||| |||||||| | || |||||||||||||||||||| || ||||||| || |||||| |||||||| ||| || | | ||||| ||| | |
|
|
| T |
33102204 |
tcttctctctttcaacattacccaacactttggttatgggaattccacttctcatagctatgta---tggtgaatattccggtacccttatggttcaagt |
33102300 |
T |
|
| Q |
147 |
tgtggtccttcagtgtattatttggtacac |
176 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| |
|
|
| T |
33102301 |
tgtggttcttcagtgtatcatttggtacac |
33102330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 10838898 - 10838752
Alignment:
| Q |
27 |
tttagaatggacaataacactcttctccatttcaacactcccaaacactttggttatgggaatccctcttctcaaaggtatgtacggtggtgaattttct |
126 |
Q |
| |
|
||||||||||| |||||| |||| || | |||||||| || |||||||||||||||||||| ||| | | | | |||||| |||||| | ||| |
|
|
| T |
10838898 |
tttagaatggatgataacaatcttttcattatcaacacttcctaacactttggttatgggaattcctttgttaattgctatgta---tggtgattattca |
10838802 |
T |
|
| Q |
127 |
gggagtttgatggtacaaattgtggtccttcagtgtattatttggtacac |
176 |
Q |
| |
|
|| || || ||||| ||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
10838801 |
ggtagcttaatggttcaagttgtggttcttcagtgtattatttggtacac |
10838752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University