View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17499_low_9 (Length: 383)
Name: NF17499_low_9
Description: NF17499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17499_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37041203 - 37040910
Alignment:
| Q |
1 |
taaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacctctgcccacaaaacatttggacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37041203 |
taaaacaattcaattaacaatcttaattaatcaacttcataattctcttaaatcaatgtaaccaaattaaattacttctgcccacaaaacatttggacta |
37041104 |
T |
|
| Q |
101 |
gtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttgcaaatattctatagcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37041103 |
gtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcaccttcaatttcttgcaaatattctatagcac |
37041004 |
T |
|
| Q |
201 |
cccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacctacac |
294 |
Q |
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| T |
37041003 |
cccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacctacac |
37040910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 73 - 291
Target Start/End: Original strand, 36272645 - 36272863
Alignment:
| Q |
73 |
tacctctgcccacaaaacatttggactagtgtgagctttgatgaaataatcagtgccccatttgattgcttccattgtgtgttgtaattcaccagcacct |
172 |
Q |
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||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||| || | ||||||||| | |
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| T |
36272645 |
tacctctgcccacaacacatttgggctagtatgagctttgatgaaataatcagttccccatttaattgcttccattacatgaccaagttcaccagcttca |
36272744 |
T |
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| Q |
173 |
tcaatttcttgcaaatattctatagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataatacc |
272 |
Q |
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| T |
36272745 |
acaatttcttgcctaaactcaataacactccatgacaacattgtgacagtaaatgccattggtaaaccaaatttcacatgatcacctgcatcatagtacc |
36272844 |
T |
|
| Q |
273 |
ctcctaccaaatccaccta |
291 |
Q |
| |
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|||| |||||||| ||||| |
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| T |
36272845 |
ctccaaccaaatcaaccta |
36272863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 41915381 - 41915316
Alignment:
| Q |
202 |
ccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcata |
267 |
Q |
| |
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|||||| | |||||| |||||||||||||||||||| |||||||| |||| ||| ||||||||||| |
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| T |
41915381 |
ccatgacatcattgtaacagtaaatgccattggtaacccaaatttcacattatcccctgcatcata |
41915316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 194 - 282
Target Start/End: Original strand, 28582400 - 28582488
Alignment:
| Q |
194 |
atagcaccccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaa |
282 |
Q |
| |
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||||| ||||||| ||||||||| ||| | | |||||||||| ||||| || |||||||||||||||||||| |||||||| ||||| |
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| T |
28582400 |
atagccccccatgcaagcattgtgacactgtaagccattggtagcccaaacttcacatgatcacctgcatcatagtaccctcccaccaa |
28582488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 39419553 - 39419644
Alignment:
| Q |
202 |
ccatgaaagcattgtcacagtaaatgccattggtaaaccaaattttacatgatcacctgcatcataataccctcctaccaaatccacctaca |
293 |
Q |
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|||||||||||| || |||||| ||||| || |||||||| || |||| ||||| ||||||||||||||||| |||||||| ||||||| |
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| T |
39419553 |
ccatgaaagcatagtggtagtaaaagccataggaaaaccaaacttgacattgtcaccagcatcataataccctccaaccaaatcaacctaca |
39419644 |
T |
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