View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1749_high_2 (Length: 356)
Name: NF1749_high_2
Description: NF1749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1749_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 342
Target Start/End: Original strand, 38486221 - 38486544
Alignment:
| Q |
19 |
ggatgagaatgagaaggactattattctgttcttgttaagtatgaccaacagctggagagggaggtggaaatataccgtgtaaaattgccaggtcccttg |
118 |
Q |
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| T |
38486221 |
ggatgagaatgagaaggactattattctgttcttgttaagtatgaccaacagctggagagggaggtggaaatataccgtgtaaaattgccaggtcccttg |
38486320 |
T |
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| Q |
119 |
aaacttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccaggacaactactttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486321 |
aaacttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccaggacaactactttg |
38486420 |
T |
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| Q |
219 |
aggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaacatatatttacagg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486421 |
aggaggcacttaaagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaacatatatttacagg |
38486520 |
T |
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| Q |
319 |
tttcgtttcctctcttgcttggtt |
342 |
Q |
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||||||||| |||||||||||||| |
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| T |
38486521 |
tttcgtttcttctcttgcttggtt |
38486544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 222
Target Start/End: Original strand, 3685536 - 3685655
Alignment:
| Q |
103 |
attgccaggtcccttgaaacttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaac |
202 |
Q |
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| T |
3685536 |
attgcctggtcctttaaaacttggagaagggaaaccggaaaatcagaatcatgcaatgatctttacgcggggtgatgcaattcagaccatagatatgaat |
3685635 |
T |
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| Q |
203 |
caggacaactactttgagga |
222 |
Q |
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| T |
3685636 |
caagacaattattttgagga |
3685655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 30295375 - 30295459
Alignment:
| Q |
122 |
cttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccagg |
206 |
Q |
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||||||||||| ||||| |||||||||||| | || || |||| |||||| || || || | ||||| |||||||||||||||| |
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| T |
30295375 |
cttggagaagggaagcctgaaaatcaaaacaatgcaataatatacactcgtggcgaagccctccaaacaattgatatgaaccagg |
30295459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 31 - 345
Target Start/End: Original strand, 30120632 - 30120946
Alignment:
| Q |
31 |
gaaggactattattctgttcttgttaagtatgaccaacagctggagagggaggtggaaatataccgtgtaaaattgccaggtcccttgaaacttggagaa |
130 |
Q |
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|||||| |||| ||||| |||||||||||||| || ||| |||| | |||||| ||| ||||| | || ||| |||| ||||| ||||| || || || |
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| T |
30120632 |
gaaggagtatttctctgtccttgttaagtatgatcagcagttggaaaaggaggttgaagtatacagagtcaaactgccgggtccattgaagctcggggag |
30120731 |
T |
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| Q |
131 |
ggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccaggacaactactttgaggaggcactta |
230 |
Q |
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|||||||| || |||||||| ||||||||||| |||||||||||||| || | || ||||| || ||||| ||||| |||||||||||||| ||||| | |
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| T |
30120732 |
ggaaagcccgagaatcaaaatcacgccatcatcttcactcgcggggacgctttgcagactatagacatgaatcaggataactactttgaggaagcactca |
30120831 |
T |
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| Q |
231 |
aagtacgaaatctcttggaagaattcaagcattactatggtattcgaaaaccaactattttgggagtgagggaacatatatttacaggtttcgtttcctc |
330 |
Q |
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| | |||||||| | ||||| | | | |||||| ||| | || |||||||| ||||| || || |||||||| || || || || | ||| ||||| |
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| T |
30120832 |
agatgagaaatctccttgaagagtatagacgttactacggtgtccggaaaccaacaattttaggtgtcagggaacacattttcactggctccgtgtcctc |
30120931 |
T |
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| Q |
331 |
tcttgcttggttcat |
345 |
Q |
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|||||| |||||||| |
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| T |
30120932 |
tcttgcctggttcat |
30120946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 34191617 - 34191701
Alignment:
| Q |
122 |
cttggagaaggaaagccggaaaatcaaaaccacgccatcatattcactcgcggggatgcaattcaaactattgatatgaaccagg |
206 |
Q |
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||||| ||||||||||| || || ||||| || || || |||||||| || || |||||| ||||||||||||||||||| |||| |
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| T |
34191617 |
cttggtgaaggaaagcctgagaaccaaaatcatgcgataatattcacccgtggtgatgcacttcaaactattgatatgaatcagg |
34191701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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