View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1749_high_3 (Length: 336)
Name: NF1749_high_3
Description: NF1749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1749_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 176 - 320
Target Start/End: Original strand, 12284520 - 12284664
Alignment:
| Q |
176 |
ttatgccattgatatatattattggaaccatagtgtcttctttgttattatctctaaaaccttatattgttaacatgacatcgagagcaaggttcaaact |
275 |
Q |
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| T |
12284520 |
ttatgccattgatatatattattggaaccatagtgtcttctttgttattatctctaaaaccttatattgttaacatgacatcgagagcaaggttcaaact |
12284619 |
T |
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| Q |
276 |
cagtcctcttcaaactattcgtcacttctattgtttagttcccta |
320 |
Q |
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| T |
12284620 |
cagtcctctttaaactattcgtcacttctattgtttagttcccta |
12284664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 180
Target Start/End: Original strand, 12279067 - 12279235
Alignment:
| Q |
8 |
aagcataggaacccttctttgtaacttccatattcttgggaattatttttacaaccatgaaacaaacacccctttaggcttaattaagctatcggaaact |
107 |
Q |
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| T |
12279067 |
aagcataggaacccttctttgtaacttccatattcttgggaattatttttacaaccatgaaacaaacgcccctttaggcttaa----gctattg-aaact |
12279161 |
T |
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| Q |
108 |
taatgttacgtttctaagta----gtacattaataggtttaattatatattgtcttgtcacattttcatatgttatg |
180 |
Q |
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| T |
12279162 |
ttatgttatgtttctaagtaagtagtacattaa---gtttaattatatattgtcttgtcacattttcatatgttatg |
12279235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 19542127 - 19542087
Alignment:
| Q |
232 |
aaaccttatattgttaacatgacatcgagagcaaggttcaa |
272 |
Q |
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| T |
19542127 |
aaaccctatattgttaacatgacatcaagagcatggttcaa |
19542087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 27039220 - 27039156
Alignment:
| Q |
11 |
cataggaacccttctttgtaacttccatattcttgggaattatttttacaaccatgaaacaaaca |
75 |
Q |
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| T |
27039220 |
cataggaacccatctttctaacatccatattcctggaaataatttttacaaccacgaaacaaaca |
27039156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 1541369 - 1541422
Alignment:
| Q |
25 |
tttgtaacttccatattcttgggaattatttttac-aaccatgaaacaaacacc |
77 |
Q |
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| T |
1541369 |
tttgtaacttctatattctagtgaataatttttacaaaccatgaaacaaacacc |
1541422 |
T |
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