View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1749_high_5 (Length: 284)
Name: NF1749_high_5
Description: NF1749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1749_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 12541276 - 12541528
Alignment:
| Q |
18 |
tgtcatgtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaat |
117 |
Q |
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| T |
12541276 |
tgtcaagtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaat |
12541375 |
T |
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| Q |
118 |
gctattagagtaacnnnnnnnatctttttacataattacacaaactaaataattgaatgtgagtgtgctttaatggaaaattgacaacgtggtcttagtt |
217 |
Q |
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| T |
12541376 |
gctattagagtaactttttttatctttttacataattacacaaactaaataattgaatgtgagtgtgctttaatggaaaattgacaacgtggtcttagtt |
12541475 |
T |
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| Q |
218 |
tgttttaaagtctgtcagtcaagttcaatacaatacagtgttttcgcatgtcg |
270 |
Q |
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| T |
12541476 |
tgttttaaagtctgtcagtcaagttcaatacaatacagtgttttcgaatgtcg |
12541528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 12487385 - 12487498
Alignment:
| Q |
18 |
tgtcatgtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaat |
117 |
Q |
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| T |
12487385 |
tgtcaagtatgtcttttcgctcgcccacacgaaggcataggttgtgcacctgaatgcacaactaaagatttaaaatgtagttctacgactctatgctaat |
12487484 |
T |
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| Q |
118 |
gctattagagtaac |
131 |
Q |
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| T |
12487485 |
gctataaaagtaac |
12487498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 12487595 - 12487691
Alignment:
| Q |
154 |
tacacaaactaaataattgaatgtgagtgtgcttt-aatggaaaattgacaacgtggtcttagtttgttttaaagtctgtcagtcaagttcaataca |
249 |
Q |
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| T |
12487595 |
tacacaaactaactagttgaatgtgagtgtgctttcaatggaaaattgacaatgtggtcttagtttgttttaaagtctgtcagtcaagttcaataca |
12487691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 12508678 - 12508722
Alignment:
| Q |
25 |
tatgtcttttcgctcgcccacacgaaggcataggttgtgcacctg |
69 |
Q |
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| T |
12508678 |
tatgtcttttctcttgccgacacaaaggcataggttgtgcacctg |
12508722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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