View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1749_high_7 (Length: 236)
Name: NF1749_high_7
Description: NF1749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1749_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 10182011 - 10181804
Alignment:
| Q |
13 |
catcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatgttagggacacttacataataaaagcatg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10182011 |
catcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatgttagtgacacttacataataaaagcatg |
10181912 |
T |
|
| Q |
113 |
ctgttattacctcctccagcacgattctattttccgatcttcaaccctggtatagagcaattttacaacgggacagcatccgaagattgatgattaagca |
212 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10181911 |
ctgttattacatcctccagcacgattctattttctgatcttcaaccctggtatcgagcaattttacaacgggacagcatccgaagattgatgattaagca |
10181812 |
T |
|
| Q |
213 |
atcacatt |
220 |
Q |
| |
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|||||||| |
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| T |
10181811 |
atcacatt |
10181804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 10187051 - 10186844
Alignment:
| Q |
13 |
catcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatgttagggacacttacataataaaagcatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10187051 |
catcactctaaatagaaactcaaaaactccacataattagcatatataatttgcatgggctcaaaacctatgttagtgacacttacataataaaagcatg |
10186952 |
T |
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| Q |
113 |
ctgttattacctcctccagcacgattctattttccgatcttcaaccctggtatagagcaattttacaacgggacagcatccgaagattgatgattaagca |
212 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10186951 |
ctgttattacatcctccagcacgattctattttctgatcttcaaccctggtatcgagcaattttacaacgggacagcatccgaagattgatgattaagca |
10186852 |
T |
|
| Q |
213 |
atcacatt |
220 |
Q |
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|||||||| |
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| T |
10186851 |
atcacatt |
10186844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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