View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1749_low_4 (Length: 330)
Name: NF1749_low_4
Description: NF1749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1749_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 40665612 - 40665310
Alignment:
| Q |
15 |
tcactgaagacctcagtgtctggagcaaccacacagaactccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaa |
114 |
Q |
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|||| ||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665612 |
tcacagaagatctcagtgtctggagcaaccgtacagtactcaccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaa |
40665513 |
T |
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| Q |
115 |
atagatctccttttctgacgggacgataagcttccacgaaatacgctgtaaattacatacattaaaaaagttaagacttgtgc--aaagattaacatata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40665512 |
atagatctccttttctgacgggacgataagcttccacgaaataggctgtaaattatatacattaaaaaagttaagacttgtgcaaaaagattaacatata |
40665413 |
T |
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| Q |
213 |
catataacatattcaaaatgtaaaattataatgcctctaagacactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40665412 |
catataacatattcaaaatgtaaaattataatgcctctaagaaactaaagtttaaagattagacaaagctagcaaaaccaagtgatgaaaggtgggaact |
40665313 |
T |
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| Q |
313 |
cac |
315 |
Q |
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||| |
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| T |
40665312 |
cac |
40665310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 215
Target Start/End: Original strand, 40724447 - 40724641
Alignment:
| Q |
20 |
gaagacctcagtgtctggagcaaccacacagaactccccaggatcagtttcaatgaccttaaactctacacttctcatccctccccgcacaagaaataga |
119 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40724447 |
gaagacctcagtgtctggagcaaccgcacagaactccccaggatcagtttcattgaccttaaattctacacttctcatccctccccgcacaagaaataga |
40724546 |
T |
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| Q |
120 |
tctccttttctgacgggacgataagcttccacgaaatacgctgtaaattacatacattaaaaaagttaagacttgtgcaaagattaacatatacat |
215 |
Q |
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|||||||||||||| |||| |||||| |||| |||||| ||||||||||| |||||| ||||||||| ||||||||||| ||| || |||||||| |
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| T |
40724547 |
tctccttttctgaccggacaataagcctccaagaaataggctgtaaattagatacatcaaaaaagtt-agacttgtgcagagacaaaaatatacat |
40724641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 274 - 315
Target Start/End: Original strand, 40725193 - 40725234
Alignment:
| Q |
274 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcac |
315 |
Q |
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| T |
40725193 |
gacaaagctagcaaaaccaagtgatgaaaggtgggaactcac |
40725234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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