View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1749_low_7 (Length: 263)
Name: NF1749_low_7
Description: NF1749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1749_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 26017968 - 26018208
Alignment:
| Q |
7 |
ggacatcatcaattaattgcaatgttcttttcatgagatcaatttgctcaactatagtactattaaccgagtaactgatttagtttctcttttcaatctt |
106 |
Q |
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| T |
26017968 |
ggacttcatcaattaattgcaatgttcttttcatgagatcaatttgctcaactatagtactattaaacgagtaactgatttagtttctcttttcaatctt |
26018067 |
T |
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| Q |
107 |
gttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagggagcaatagacaaggatccttccaagcttgtaagaaacttgtagatt |
206 |
Q |
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| T |
26018068 |
gttcaggttagtaatcaagaagctgtagatcttgctggtcctttatgtgtagagagcaatagacaaggatccttccaagcttgtaagaaacttgtagatt |
26018167 |
T |
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| Q |
207 |
tatctgtatcgcgaggctctttcgatgatataagtgttatg |
247 |
Q |
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| T |
26018168 |
tatctgtatcgcgaggctctatcgatgatataagtgttatg |
26018208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 26003301 - 26003472
Alignment:
| Q |
76 |
agtaactgatttagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagggagcaatagacaagga |
175 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003301 |
agtaactgattaagtttctcttttcaatcttgttcaggttagtaatcaagaagcagtagatatagcacatccttattgtgcagggagcaatagacaagga |
26003400 |
T |
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| Q |
176 |
tccttccaagcttgtaagaaacttgtagatttatctgtatcgcgaggctctttcgatgatataagtgttatg |
247 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
26003401 |
tccttcccagcttgtaagaaacttgtagatttatctgtatcgcgaggctctatcgacgatataagtgttatg |
26003472 |
T |
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