View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1749_low_8 (Length: 249)
Name: NF1749_low_8
Description: NF1749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1749_low_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 28411686 - 28411915
Alignment:
| Q |
19 |
atctgcatatgtaaatgtgtttcaagcatcattattatttagcttatataataatatagttcctaaccata-----gttgtccaaaattgttttaaaatt |
113 |
Q |
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| T |
28411686 |
atctgcatatgtaaatgtgtttcatgcatcattttt---tcgcttatgtaata---tagttcctaaccttaacaaagttgtccaaatttgttctaaaatt |
28411779 |
T |
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| Q |
114 |
gtaacattaaataataatccacctgatgtcgatgtttatgggaacatctgtgccagtcatggaagatgtccatgatcttaaaaatgaaacctccaccata |
213 |
Q |
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| T |
28411780 |
gtaacattaaataataatccacctgatatcgatgtttatgggaacatctatgccagtcatggaagatgtccatgatcttaaaaatgaaacctccaccata |
28411879 |
T |
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| Q |
214 |
ttctcattagctgctataactgaaaattttgtccca |
249 |
Q |
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| T |
28411880 |
ttctcattagctactataactgaaaattttgtccca |
28411915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 28383284 - 28383165
Alignment:
| Q |
126 |
aataatccacctgatgtcgatgtttatgggaacatctgtgccagtcatggaagatgtccatgatcttaaaaatgaaacctccaccatattctcattagct |
225 |
Q |
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| T |
28383284 |
aataatccaccttttgtctatgtttatagggacatctttgccactcattgaagatgtccatgatcttaaaaatgaaacctccaccatattctcatcagct |
28383185 |
T |
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| Q |
226 |
gctataactgaaaattttgt |
245 |
Q |
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| T |
28383184 |
gctataaccgaaaagtttgt |
28383165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 28391431 - 28391311
Alignment:
| Q |
129 |
aatccacctgatgtcgatgtttatgggaacatctgtgccagtcatggaagatgtccatgatcttaaaaatgaaacctccaccatattctcattagctgct |
228 |
Q |
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| T |
28391431 |
aatccaccttatatctatgtttatggggacatttttgccactcatggaatgtgtccataatcttgaaaatgaaacctccaccatattctcatcagctgca |
28391332 |
T |
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| Q |
229 |
ataactgaaaattttgtccca |
249 |
Q |
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| T |
28391331 |
ataactgaaaaatttgtccca |
28391311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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