View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17500_high_3 (Length: 250)
Name: NF17500_high_3
Description: NF17500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17500_high_3 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 7971306 - 7971546
Alignment:
| Q |
10 |
gcaaaggcaaatgcaacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactc |
109 |
Q |
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| T |
7971306 |
gcaaaggcaaatgcaacagagccaagtgcattaaagaaattaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactc |
7971405 |
T |
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| Q |
110 |
ccttgtgcatactaccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcaatccacaagttacttataaaga |
209 |
Q |
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| T |
7971406 |
ccttgtgtatactaccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcattccacaagttacttataaaga |
7971505 |
T |
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| Q |
210 |
gtgatgaaaataaaatgaaatccagaatacaaatttgagcc |
250 |
Q |
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| T |
7971506 |
gtgatgaaaataaaatgaaatccaaaatacaaatttgagcc |
7971546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 8042408 - 8042188
Alignment:
| Q |
9 |
agcaaaggcaaatgcaacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtact |
108 |
Q |
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| T |
8042408 |
agcaaaggcaaatgcaacagagccaagtgcattaaagaaataaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtact |
8042309 |
T |
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| Q |
109 |
cccttgtgcatactaccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttc--aatccacaagttacttataa |
206 |
Q |
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| T |
8042308 |
cccttgtgtatactaccagcccaagcaattgtagagtaactgaaacacaaacataaaagatttaaattagcttgtttcatattccacaagttggatataa |
8042209 |
T |
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| Q |
207 |
agagtgatgaaaataaaatga |
227 |
Q |
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| T |
8042208 |
tgagtggtgaaaataaaatga |
8042188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 8032504 - 8032363
Alignment:
| Q |
9 |
agcaaaggcaaatgcaacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtact |
108 |
Q |
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| T |
8032504 |
agcataggcaaatgcaacagagccgagtgcattaaagaaattaaagactgattctgcagtatttgtagccttgctactatattgtacattttcttgtact |
8032405 |
T |
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| Q |
109 |
cccttgtgcatactaccagcccaagcaattgtagagtaactg |
150 |
Q |
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| T |
8032404 |
cccttgtgtacactagtagtccaagcaattgtagaataactg |
8032363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 41381747 - 41381888
Alignment:
| Q |
14 |
aggcaaatgcaacagcgccgagtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactccctt |
113 |
Q |
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| T |
41381747 |
aggcaaaagcaacagaaccaagtgcattaaagaaattaaagacagatcctgcactagtcgtggctttgctagtatattgtacatttgcttgtactccctt |
41381846 |
T |
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| Q |
114 |
gtgcatactaccagcccaagcaattgtagagtaactgaaaca |
155 |
Q |
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| T |
41381847 |
gtgtacactaccaacccaagcaattgcagagtaactgaaaca |
41381888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 2628 - 2744
Alignment:
| Q |
34 |
agtgcattaaagaaatcaaagacagatcctgcagtagttgtagctttgctactatattgtacattttctagtactcccttgtgcatactaccagcccaag |
133 |
Q |
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| T |
2628 |
agtgcattaaagaaattaaagactgattctgcggccgtcgtagcgtttctactatattgtacattttctattactcccttgtgtgcaccggcagtccaag |
2727 |
T |
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| Q |
134 |
caattgtagagtaactg |
150 |
Q |
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| T |
2728 |
caatagtagagtaactg |
2744 |
T |
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