View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17500_low_1 (Length: 319)
Name: NF17500_low_1
Description: NF17500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17500_low_1 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 7971539 - 7971841
Alignment:
| Q |
1 |
tttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaaatggagttcaagttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7971539 |
tttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacatgacggctgccaccaaagatacaccggaaatggagttcaagttt |
7971638 |
T |
|
| Q |
101 |
ggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactgtattgtgaaattttt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7971639 |
ggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacagactgtattgtgaaattttt |
7971738 |
T |
|
| Q |
201 |
gcaatgatgcacctccggtgaccatgtagacaatgtccgagccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7971739 |
gcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
7971838 |
T |
|
| Q |
301 |
agc |
303 |
Q |
| |
|
||| |
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|
| T |
7971839 |
agc |
7971841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 8042149 - 8041847
Alignment:
| Q |
1 |
tttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaaatggagttcaagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8042149 |
tttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacatgacggctgccaccaaagatacaccggaaatggagttcaagttt |
8042050 |
T |
|
| Q |
101 |
ggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactgtattgtgaaattttt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8042049 |
ggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacagactgtattgtgaaattttt |
8041950 |
T |
|
| Q |
201 |
gcaatgatgcacctccggtgaccatgtagacaatgtccgagccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8041949 |
gcaatgatgcacctccggtgaccatgtagacaatgtccgacccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
8041850 |
T |
|
| Q |
301 |
agc |
303 |
Q |
| |
|
||| |
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|
| T |
8041849 |
agc |
8041847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 8032269 - 8032034
Alignment:
| Q |
1 |
tttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaaatggagttcaagttt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
8032269 |
tttgagcctaaaa-gtaatatagagaatagaaagatgtcgatataccaaatggacatgactgctgcaaccaaggatacaccggaaatggagttcaagttt |
8032171 |
T |
|
| Q |
101 |
ggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactgtattgtgaaattttt |
200 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||| || || |
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| T |
8032170 |
ggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaataggtcaatttgatatttttgcaacttgaacacactgtattgtggaacttcc |
8032071 |
T |
|
| Q |
201 |
gcaatgatgcacctccggtgaccatgtagacaatgtc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8032070 |
gcaatgatgcacctccggtgaccatgtagacaatgtc |
8032034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 52 - 300
Target Start/End: Original strand, 41381989 - 41382237
Alignment:
| Q |
52 |
ggacataacggctgccaccaaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaag |
151 |
Q |
| |
|
||||||||| ||||| || |||||||||| |||| |||||| | ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
41381989 |
ggacataactgctgcaacaaaagatacactagaaagggagttgaggttgggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaaaag |
41382088 |
T |
|
| Q |
152 |
ctcaatttgattggtttgcaacttggacacactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccgagccgacctgta |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| |
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| T |
41382089 |
ctcaatttgattggtttgcaacttggacaaactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtccaccccaacttgta |
41382188 |
T |
|
| Q |
252 |
ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41382189 |
ccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaa |
41382237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 3062 - 3337
Alignment:
| Q |
1 |
tttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaaatggagttcaagttt |
100 |
Q |
| |
|
|||||| |||||||||| ||||||||| | | ||| || |||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
3062 |
tttgagtctaaaaagtactatagagaacagatagaagtagatataccaaatggacatgactgctgccaccaaagatacaccagaaatggagttcaagttt |
3161 |
T |
|
| Q |
101 |
ggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactgtattgtgaaattttt |
200 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||| || ||| |
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|
| T |
3162 |
ggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaatatgtcaatttgatatttttgcaacttggacacactgtattgtggaactttc |
3261 |
T |
|
| Q |
201 |
gcaatgatgcacctccggtgaccatgtagacaatgtccgagccgacctgtaccacaagttgttgaggcatcacaat |
276 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||| | || || | ||| |||||||||||||||| |||||| |
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|
| T |
3262 |
gcagtgatgcacctccggtgaccatgtaaacaatgttcaccccaacttctactacaagttgttgaggcaccacaat |
3337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 14198574 - 14198739
Alignment:
| Q |
71 |
aaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgc |
170 |
Q |
| |
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||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||| |||||||||| ||||| || ||| | ||||||||||| ||||| |
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| T |
14198574 |
aaagagacaccagaaatagagttcaagttagggaggtgagacaagacaaagtgaacagaggcaaaaatcattataaaataagtcaatttgatttttttgc |
14198673 |
T |
|
| Q |
171 |
aacttggacacactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgt |
236 |
Q |
| |
|
|| | |||||| |||| ||||| || ||||| ||| |||||||| |||||||||||||||| |
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|
| T |
14198674 |
aatcggaacacacggtatcatgaaacttctgcaaagattttcctccggttaccatgtagacaatgt |
14198739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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