View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17501_high_11 (Length: 300)
Name: NF17501_high_11
Description: NF17501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17501_high_11 |
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| [»] chr7 (7 HSPs) |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 1350494 - 1350781
Alignment:
| Q |
13 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1350494 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1350593 |
T |
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| Q |
113 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350594 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1350693 |
T |
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| Q |
213 |
cagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
300 |
Q |
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| T |
1350694 |
cagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
1350781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 1384148 - 1384435
Alignment:
| Q |
13 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1384148 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1384247 |
T |
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| Q |
113 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1384248 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1384347 |
T |
|
| Q |
213 |
cagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
300 |
Q |
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| T |
1384348 |
cagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
1384435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 1390253 - 1390540
Alignment:
| Q |
13 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1390253 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1390352 |
T |
|
| Q |
113 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390353 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1390452 |
T |
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| Q |
213 |
cagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
300 |
Q |
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| T |
1390453 |
cagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
1390540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 1394499 - 1394786
Alignment:
| Q |
13 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1394499 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1394598 |
T |
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| Q |
113 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
212 |
Q |
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|||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1394599 |
gccttttcaatgaacatatatatagttttaaacttaaatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1394698 |
T |
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| Q |
213 |
cagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1394699 |
cagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
1394786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 1358400 - 1358687
Alignment:
| Q |
13 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
112 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1358400 |
cagagaacaattggccaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1358499 |
T |
|
| Q |
113 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
212 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358500 |
gccttttcaatgaacatatatatagttttgaatttagatggttaattggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1358599 |
T |
|
| Q |
213 |
cagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358600 |
cagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgcttctcaagtgttgaag |
1358687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 178 - 300
Target Start/End: Original strand, 1374117 - 1374239
Alignment:
| Q |
178 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374117 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1374216 |
T |
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| Q |
278 |
ctgatgcttctcaagtgttgaag |
300 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1374217 |
ctgatgcttctcaagtgttgaag |
1374239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 1373787 - 1373867
Alignment:
| Q |
13 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtcta |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
1373787 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtcta |
1373867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 7010315 - 7010430
Alignment:
| Q |
185 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
284 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
7010315 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
7010414 |
T |
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| Q |
285 |
ttctcaagtgttgaag |
300 |
Q |
| |
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|||||||||||||||| |
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| T |
7010415 |
ttctcaagtgttgaag |
7010430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 7007237 - 7007352
Alignment:
| Q |
185 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
284 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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| T |
7007237 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
7007336 |
T |
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| Q |
285 |
ttctcaagtgttgaag |
300 |
Q |
| |
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|||||||||||||||| |
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| T |
7007337 |
ttctcaagtgttgaag |
7007352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 7009807 - 7009868
Alignment:
| Q |
17 |
gaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatt |
78 |
Q |
| |
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||||||||||| || ||||| ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
7009807 |
gaacaattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatt |
7009868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 7006716 - 7006774
Alignment:
| Q |
20 |
caattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatt |
78 |
Q |
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|||||||| || ||||| ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
7006716 |
caattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatt |
7006774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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