View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17502_high_12 (Length: 319)

Name: NF17502_high_12
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17502_high_12
NF17502_high_12
[»] chr8 (1 HSPs)
chr8 (19-314)||(419507-419794)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 419794 - 419507
Alignment:
Q  19 tggaaaacgtagctgcaggaagagattggctgatcataatcgtcgtaggagaaaaactcagcaccctaatactcaagatattcacaaatctcacaatact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419794 tggaaaacgtagctgcaggaagagattggctgatcataatcgtcgtaggagaaaaactcagcaccctaatactcaagatattcacaaatctcacaatact 419695  T
Q  119 ttggatagttctgccacaagtaattttctttattaaaatatatgtctttagttatctattatctttaaccatatataaataagcatgattatttatggta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||||    ||||| ||    
T  419694 ttggatagttctgccacaagtaattttctttattaaaatatatgtctttagttatctattctctttaacc----ataaataagcatga----ttatgtta 419603  T
Q  219 cgtacataatgatttttattttattttcaaggatcccctccggagtctggaactcaatctacatcttctgtgactgtggccgtatctccaccggat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  419602 cgtacataatgatttttattttattttcaaggatcccctccggagtctggaactcaatccacatcttctgtgactgtggccgtatctccaccggat 419507  T

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