View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17502_high_13 (Length: 301)

Name: NF17502_high_13
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17502_high_13
NF17502_high_13
[»] chr8 (1 HSPs)
chr8 (5-285)||(43970098-43970392)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 43970392 - 43970098
Alignment:
Q  5 aaaataaatacgatgaatcaaagtgacaactctataattaggaatcattgtaattagtgtgtgagattaagtgagagattggaagcaaacaatgtgagaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43970392 aaaataaatacgatgaatcaaagtgacaactctataattaggaatcattgtaattagtgtgtgagattaagtgagagattggaagcaaacaatgtgagaa 43970293  T
Q  105 ttccttaaagaaatagggaatcaga-gattgt---------------accgtcaacgtagctttgtagtgtgtcgttcattggccaccacagtctccttc 188  Q
    ||||||||||||||||||||||||| | ||||               ||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  43970292 ttccttaaagaaatagggaatcagaggtttgtaccgtcaacaatgcaaccgtcaacgtagctttgtagtgcgtcgttcattggccac--cagtctccttc 43970195  T
Q  189 tttacttacgtctctctattgccacttcagtgtagtgtagttgtcgtagactcaaagtcgtttatactatatacattatttctaaagtattattttt 285  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  43970194 tttatttacgtctctctattgccacttcagtgtagtgtagttgtcgtagacccaaagtcgtttatactatatacattacttctaaagtattattttt 43970098  T

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