View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_high_16 (Length: 270)
Name: NF17502_high_16
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 49689127 - 49689368
Alignment:
| Q |
18 |
catcatggattccatctctaatgagtgaaaagtaagnnnnnnnncacttcatgcgccggggatagcttgggaaatcagattaatatactccaatggatag |
117 |
Q |
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| T |
49689127 |
catcatggattccatctctaatgagtgaaaagtaagaaaaaaa-cacttcatgcgccggggatagcttgggaaatcatattaatatactccaatggatag |
49689225 |
T |
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| Q |
118 |
agtagcaagaatgacttacctgagcatcgtccaacatttgcgactcgcgaagaatgcagtcattttcctgttggtaactgcaaattaaagcagagtcgtc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49689226 |
agtagcaagaatgacttacctgagcatcgtccaacatttgcgactcgcgaagaatgcagtcattttcctgttggtaactgc-----aaagcagagtcgtc |
49689320 |
T |
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| Q |
218 |
accggagatgaagaagaggcaaatgttaggtatgtgttctgtgctgct |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
49689321 |
accggagatgaagaagaggcaaatgttaggtatgtgttcagtggtgct |
49689368 |
T |
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