View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_high_18 (Length: 264)
Name: NF17502_high_18
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_high_18 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 31059131 - 31058877
Alignment:
| Q |
10 |
aagaaaatcaaagtttcaagtctaagcttatgtgttgtgctatgatggataacaattcaacttcattgcaccatcataaaagctttatttgctttggata |
109 |
Q |
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| T |
31059131 |
aagaaaatcaaagtttaaagtctaagcttatgtgttgtgctatgatggataacaattcaacttcattgcaccatcataaaagctttatttgctttggata |
31059032 |
T |
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| Q |
110 |
ataaagtagatagaataagcataaactacaatgcgccttcatgattggtaaatagtctattgggtcagctgttttgggtagtcattgtttagtatgctaa |
209 |
Q |
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| T |
31059031 |
ataaagtagatagaataagcataaactacaatgcgccttcatgattggtaaatagtctattgggtcagctgttttgggtagtcattgtttagtatgctaa |
31058932 |
T |
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| Q |
210 |
agtggctgcgttagttttggtttgtttccnnnnnnncatggcatgaatttaaggg |
264 |
Q |
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| T |
31058931 |
agtggctgcgttagttttgatttgtttccaaaaaaacatggcatgaatttaaggg |
31058877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 29142149 - 29142263
Alignment:
| Q |
50 |
tatgatggataacaattcaacttcattgcaccatcataaaagctttatttgctttggataataaagt-agatagaataagcataaactacaatgcgcctt |
148 |
Q |
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| T |
29142149 |
tatgatggatagaaattcaactcctctgcaccatcataacagcttaatttgcattggataataatgtaagatagaataagcataaacaataatgcagctt |
29142248 |
T |
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| Q |
149 |
catgattggtaaata |
163 |
Q |
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| T |
29142249 |
catgattgttaaata |
29142263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 55781566 - 55781338
Alignment:
| Q |
10 |
aagaaaatcaaagtttcaagtctaagcttatgtgttgtgctatgatggataacaattcaacttcattgcaccatcataaaagctttatttgctttggata |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
55781566 |
aagaaaatcaaagtttcaagtctaagcttatgtgttgtgctatgatggataacaattcaacttcattgcaccatcatgaaagctttacttgctttggata |
55781467 |
T |
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| Q |
110 |
ataaagta-gatagaataagcataaactacaatgcgccttcatgattggtaaatagtctattgggtcagctgttttgggtagtcattgtttagtatgcta |
208 |
Q |
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| T |
55781466 |
ataaagtatgattgaataagcataaactacaatgcaccttcatgattggtaaatagtctattgggtcagctgttacgggtagtcattgtttagtatgcta |
55781367 |
T |
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| Q |
209 |
aagtggctgcgttagttttggtttgtttc |
237 |
Q |
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| T |
55781366 |
aagtggctgcgttagtcttggtttgtttc |
55781338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 55845746 - 55845518
Alignment:
| Q |
10 |
aagaaaatcaaagtttcaagtctaagcttatgtgttgtgctatgatggataacaattcaacttcattgcaccatcataaaagctttatttgctttggata |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
55845746 |
aagaaaatcaaagtttcaagtctaagcttatgtgttgtgctatgatggataacaattcaacttcattgcaccatcatgaaagctttacttgctttggata |
55845647 |
T |
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| Q |
110 |
ataaagta-gatagaataagcataaactacaatgcgccttcatgattggtaaatagtctattgggtcagctgttttgggtagtcattgtttagtatgcta |
208 |
Q |
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| T |
55845646 |
ataaagtatgattgaataagcataaactacaatgcaccttcatgattggtaaatagtctattgggtcagctgttacgggtagtcattgtttagtatgcta |
55845547 |
T |
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| Q |
209 |
aagtggctgcgttagttttggtttgtttc |
237 |
Q |
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| T |
55845546 |
aagtggctgcgttagtcttggtttgtttc |
55845518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 9605499 - 9605411
Alignment:
| Q |
76 |
tgcaccatcataaaagctttatttgctttggataataaagt-agatagaataagcataaactacaatgcgccttcatgattggtaaata |
163 |
Q |
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||||||||||||| ||||| ||| || |||||||||||||| |||| ||||| | || ||||| |||| ||||| |||||| |||||| |
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| T |
9605499 |
tgcaccatcataacagcttaattagcattggataataaagtaagattgaataggtattaactataatgaaccttcttgattgttaaata |
9605411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 8510678 - 8510602
Alignment:
| Q |
81 |
catcataaaagctttatttgctttggataataaagta-gatagaataagcataaactacaatgcgccttcatgattg |
156 |
Q |
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| T |
8510678 |
catcataaaagtttaatttccactggataataaaaaaagatagaataagcataaactaaaatgcaccttcatgattg |
8510602 |
T |
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