View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_high_3 (Length: 535)
Name: NF17502_high_3
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 521
Target Start/End: Complemental strand, 28094207 - 28093699
Alignment:
| Q |
16 |
tgtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttacta |
115 |
Q |
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| T |
28094207 |
tgtttgtgtatatataagcaacagtttgcgatgtggtgtcatatttgtgcatatatatttattcttgcatgcatgcatttgttggaaatagaggttacta |
28094108 |
T |
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| Q |
116 |
gaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28094107 |
gaataaaagggtcaattaaacattccatgaaaaaattagccacactaacactcttcatgcttaacagaaagcaaaataaaatgttgatagattattagac |
28094008 |
T |
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| Q |
216 |
atctatcaaaatcctctttatgtaatattgtaatgcaacaataccacattt---aagtttatattttgaatccccttcacatttgctccggttgaatgcg |
312 |
Q |
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| T |
28094007 |
atctatcaaaatcctctttatgtaatattgtaatgcaacaaaataaaatgttgatagattatattttgaatccccttcacatttgctccggttgaatgcg |
28093908 |
T |
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| Q |
313 |
tatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaacacgaatactgaac |
412 |
Q |
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| T |
28093907 |
tatctatgatgaaatgtgacaaaagtgctttaaccaaatagacttgatggatgttgggggcagagtctatgaaccattggtgcaaacacgaatactgaac |
28093808 |
T |
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| Q |
413 |
gcgacattgaccaagacacttcggcacccatagcatttggaaaaatgaattaattgaatgtaatccccttccgggaccctgtgtacgcgggagctttact |
512 |
Q |
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| T |
28093807 |
gtgacattgaccaagacacttcggcacccatagcatttggaaaaatgaattaattgaatgtaatcctcttccaagaccctgtgtacgcgggagctttact |
28093708 |
T |
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| Q |
513 |
gcacaggtt |
521 |
Q |
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| T |
28093707 |
gcaccggtt |
28093699 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 476
Target Start/End: Original strand, 41330312 - 41330341
Alignment:
| Q |
447 |
atttggaaaaatgaattaattgaatgtaat |
476 |
Q |
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| T |
41330312 |
atttggaaaaatgaattaattgaatgtaat |
41330341 |
T |
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