View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_high_35 (Length: 211)
Name: NF17502_high_35
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_high_35 |
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| [»] scaffold0257 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 37990357 - 37990486
Alignment:
| Q |
12 |
gataatactttgtgtggtcagattccaatgaacacaaggtttgatgcgagttgttatgttcttaataagtgcttgtgtggttctcctcttcctgcttgc- |
110 |
Q |
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| T |
37990357 |
gataataatttgtgtggtcagattccaatgaacacaaggtttgatgcgagttgttatgttcttaataagtgcttgtgtggttctcctcttcctgcttgca |
37990456 |
T |
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| Q |
111 |
------gatttgaattaatggatcccacaa |
134 |
Q |
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| T |
37990457 |
agacttgatttgaattaatggatcccacaa |
37990486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 37697019 - 37696964
Alignment:
| Q |
47 |
aaggtttgatgcgagttgttatgttcttaataagtgcttgtgtggttctcctcttc |
102 |
Q |
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||||||||||| | |||||||| || |||||||||||||||||| |||||||||| |
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| T |
37697019 |
aaggtttgatgagtattgttatgctcataataagtgcttgtgtggctctcctcttc |
37696964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 19651434 - 19651375
Alignment:
| Q |
134 |
atgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
193 |
Q |
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| T |
19651434 |
atgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
19651375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 19670258 - 19670200
Alignment:
| Q |
135 |
tgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
193 |
Q |
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| T |
19670258 |
tgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
19670200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 19665197 - 19665138
Alignment:
| Q |
134 |
atgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19665197 |
atgttatggaaaattatgaaaagatattctcatttctcatcatgaaaagtctgatacaag |
19665138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 7261 - 7202
Alignment:
| Q |
134 |
atgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7261 |
atgttatggaaaattatgaaaagatattctcatttctcatcatgaaaagtctgatacaag |
7202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 11775 - 11716
Alignment:
| Q |
134 |
atgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11775 |
atgttatggaaaattatgaaaagatattctcatttctcatcatgaaaagtctgatacaag |
11716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 9355 - 9297
Alignment:
| Q |
135 |
tgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9355 |
tgttatggaaaattatgaaaagatattctcatttctcatcatgaaaagtctgatacaag |
9297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 14066 - 14008
Alignment:
| Q |
135 |
tgttatggaaaattatgaaaagatattctcatttctcataatgaaaagtctgatacaag |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14066 |
tgttatggaaaattatgaaaagatattctcatttctcatcatgaaaagtctgatacaag |
14008 |
T |
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