View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_high_4 (Length: 526)
Name: NF17502_high_4
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_high_4 |
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| [»] scaffold0729 (2 HSPs) |
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| [»] scaffold0552 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 66 - 499
Target Start/End: Original strand, 6593705 - 6594132
Alignment:
| Q |
66 |
tataataattctccaacatgtgcataggccaaaagaaaggtgtaaattaaaatctcaagtctcagttattttaaaaaagaacttaaaattacctgtatac |
165 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6593705 |
tataataattctcctacatgtgcataggccaaaagataggtgtaaattaaaatctcaagtctcagttattttaaaaaagaacttaaaattacctgtatat |
6593804 |
T |
|
| Q |
166 |
gggtttgagtatgagatcacgtgatcctaaatatctgttagctttagtgatcgctgctacccaggtcatgagcttgtcttcttctttagaggtttcctcc |
265 |
Q |
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|
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6593805 |
gggtttgggtatgagatcacgtgatcctaaatatttgttagctttagtgatcgctgctacccaggtcatgagcttgtcttcttctttagagatttcctcc |
6593904 |
T |
|
| Q |
266 |
attgatattctatcaagaaaatcacgaaaagcgtttcctccaaacatatctccatgatagaagaagggagagacaccgtgatgatagaacacaggcagaa |
365 |
Q |
| |
|
|||||||||||||| ||||||||| |||||| || ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||| |
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| T |
6593905 |
attgatattctatccagaaaatcatgaaaagtgtctcctccaaacatatctccatgat---agaagggaccgacacc---ttgatagaacacaggcagaa |
6593998 |
T |
|
| Q |
366 |
caacgaaatctgaggtttggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaacaagactatagccac |
465 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |
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| T |
6593999 |
caaccaaatctgaggttcggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtataattttttgaaaacaagactacagcgac |
6594098 |
T |
|
| Q |
466 |
tttgcagtcttgaattacattcagcacagactct |
499 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
6594099 |
tttgcagtcttgaattacattcagcacagactct |
6594132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 103 - 318
Target Start/End: Complemental strand, 6791852 - 6791638
Alignment:
| Q |
103 |
aggtgtaaattaaaatctcaagtctcagttattttaaaaaagaacttaaaattacctgtatacgggtttgagtatgagatcacgtgatcctaaatatctg |
202 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||| |||| ||||| |||||||||||| ||| |||||||| || |
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| T |
6791852 |
aggtgtatattaaaatctcaagtctcaactattttaaaaa-gaacttaaaattacctatatattggtttatgtatgagatcacttgaacctaaataattg |
6791754 |
T |
|
| Q |
203 |
ttagctttagtgatcgctgctacccaggtcatgagcttgtcttcttctttagaggtttcctccattgatattctatcaagaaaatcacgaaaagcgtttc |
302 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||| || || |
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| T |
6791753 |
tttgctttagtgatcgctgctacccaggtcatgagcttgtcctcttctttagagatttcctccattgatattctgttgagaaaatcatgaaaagtgtctc |
6791654 |
T |
|
| Q |
303 |
ctccaaacatatctcc |
318 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
6791653 |
ctccaaacatacctcc |
6791638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 389 - 508
Target Start/End: Complemental strand, 6791564 - 6791445
Alignment:
| Q |
389 |
cactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaacaagactatagccactttgcagtcttgaattacattca |
488 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||| | |||||| | | ||||||||||||||||||||||| |
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|
| T |
6791564 |
cacttagttattttctccaattcttgtatacacgaactcgagttagcataattttttgaaaatactactataacaattttgcagtcttgaattacattca |
6791465 |
T |
|
| Q |
489 |
gcacagactctgcccgttct |
508 |
Q |
| |
|
|| | |||||| || ||||| |
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| T |
6791464 |
gcgctgactctacctgttct |
6791445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 6503152 - 6503221
Alignment:
| Q |
381 |
tttggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaa |
450 |
Q |
| |
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||||||||||||| |||||||||||||||||||| | |||| | ||||| |||||||| || |||||||| |
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|
| T |
6503152 |
tttggcaacactgggttattttctccaattcttgaagacaccatcttgatttagtataattctttgaaaa |
6503221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 492
Target Start/End: Complemental strand, 6737688 - 6737583
Alignment:
| Q |
387 |
aacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaacaagactatagccactttgcagtcttgaattacatt |
486 |
Q |
| |
|
|||||| ||||||||||||||||||||| | |||| | || ||||||||||| || ||||| || | ||||| | | |||||||| |||| ||| ||||| |
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|
| T |
6737688 |
aacactcagttattttctccaattcttgaagacaccatctagaattagtataattctttgataatacgactacaacaactttgcaatcttcaatcacatt |
6737589 |
T |
|
| Q |
487 |
cagcac |
492 |
Q |
| |
|
|||||| |
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|
| T |
6737588 |
cagcac |
6737583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 6593633 - 6593685
Alignment:
| Q |
12 |
atatccttaatataatccataattggtacatgttcgtacctgcataatatatg |
64 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||||| |||||||||| |
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|
| T |
6593633 |
atatccttaatatagtccgtaattgatacatgttcgtacctgtataatatatg |
6593685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 6506659 - 6506728
Alignment:
| Q |
381 |
tttggcaacactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaa |
450 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | |||| | ||||||||| ||| || |||||||| |
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|
| T |
6506659 |
tttggcaacactgggttattttctccaattcttgaagacaccatcttgaattaaaataattctttgaaaa |
6506728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 6830145 - 6830073
Alignment:
| Q |
351 |
agaacacaggcagaacaacgaaatctgaggtttggcaacactgagttattttctccaattcttgtatacacga |
423 |
Q |
| |
|
|||||||||| | |||||| || ||||||||| | ||||| | ||||||||||||||||||||| | |||||| |
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|
| T |
6830145 |
agaacacaggaaaaacaaccaagtctgaggttcgacaacattcagttattttctccaattcttgaacacacga |
6830073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729 (Bit Score: 120; Significance: 4e-61; HSPs: 2)
Name: scaffold0729
Description:
Target: scaffold0729; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 103 - 318
Target Start/End: Original strand, 6777 - 6991
Alignment:
| Q |
103 |
aggtgtaaattaaaatctcaagtctcagttattttaaaaaagaacttaaaattacctgtatacgggtttgagtatgagatcacgtgatcctaaatatctg |
202 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||| |||||||||||| ||| |||||||| || |
|
|
| T |
6777 |
aggtgtatattaaaatctcaagtctcaactattttaaaa-agaacttaaaattacctatatattggtttatgtatgagatcacttgaacctaaataattg |
6875 |
T |
|
| Q |
203 |
ttagctttagtgatcgctgctacccaggtcatgagcttgtcttcttctttagaggtttcctccattgatattctatcaagaaaatcacgaaaagcgtttc |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||| |||||| || || |
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|
| T |
6876 |
tttgctttagtgatcgctgctacccaggtcatgagcttgtcctcttctttagagatttcctccattgatattctgttgagaaaatcatgaaaagtgtctc |
6975 |
T |
|
| Q |
303 |
ctccaaacatatctcc |
318 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
6976 |
ctccaaacatacctcc |
6991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0729; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 389 - 508
Target Start/End: Original strand, 7065 - 7184
Alignment:
| Q |
389 |
cactgagttattttctccaattcttgtatacacgaacttgaattagtatagttttttgaaaacaagactatagccactttgcagtcttgaattacattca |
488 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||| | |||||| | | ||||||||||||||||||||||| |
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|
| T |
7065 |
cacttagttattttctccaattcttgtatacacgaactcgagttagcataattttttgaaaatactactataacaattttgcagtcttgaattacattca |
7164 |
T |
|
| Q |
489 |
gcacagactctgcccgttct |
508 |
Q |
| |
|
|| | |||||| || ||||| |
|
|
| T |
7165 |
gcgctgactctacctgttct |
7184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 454 - 508
Target Start/End: Complemental strand, 16409965 - 16409911
Alignment:
| Q |
454 |
gactatagccactttgcagtcttgaattacattcagcacagactctgcccgttct |
508 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16409965 |
gactatagcgactttgcagtcttgaattacattcagcacagactctgcccgttct |
16409911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 423
Target Start/End: Complemental strand, 9646 - 9574
Alignment:
| Q |
351 |
agaacacaggcagaacaacgaaatctgaggtttggcaacactgagttattttctccaattcttgtatacacga |
423 |
Q |
| |
|
|||||||||| | |||||| || ||||||||| | ||||| | ||||||||||||||||||||| | |||||| |
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|
| T |
9646 |
agaacacaggaaaaacaaccaagtctgaggttcgacaacattcagttattttctccaattcttgaacacacga |
9574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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