View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_high_6 (Length: 455)
Name: NF17502_high_6
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 442
Target Start/End: Complemental strand, 38066451 - 38066028
Alignment:
| Q |
19 |
caatgctggtcaaccaaaagaagctcttaaagcttacatgcgtatgcttgcttctggggtttgtcctaatgcttatacctacactgttcttgttaaggga |
118 |
Q |
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| T |
38066451 |
caatgctggtcaaccaaaagaagctcttaaagcttacatgcgtatgcttgcttctggggtttgtcctaatgcttatacctacactgttattattaaggga |
38066352 |
T |
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| Q |
119 |
cttgcatctgatgctaagtttttgaaggatgcgaagaagtatttgttggagatgatggagaaagggatgagacctaatgctgagacttatggtgcagtgt |
218 |
Q |
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| T |
38066351 |
cttgcttctgatgctaagtttttgaaggatgcgaagaagtatttgttggagatgatggagaaagggatgagacctaatgctgagacttatggtgcagtgt |
38066252 |
T |
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| Q |
219 |
ttgagggattggttacggaggagaagatcgatgaggcggagaagttgctcgaggaaatgaagggtaaggggtttgttcctgatgagaacgctgttaggga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38066251 |
ttgagggattggttacggaggagaagatcgatgaggcagagaagttgctcgaggaaatgaagggtaaggggtttgttcctgatgagaacgctgttaggga |
38066152 |
T |
|
| Q |
319 |
ggttcttagcaacaaaagaggacctgtttttagaactgtcattaacattctctttggcaaataataccaagtgattctctgtagtgtgtgactggcttca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38066151 |
ggttcttagcaacaaaagaggacctgtttttagaactgtcattaacattctctttggcaaataataccaagtgattctctgtagtgtgcgactggcttca |
38066052 |
T |
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| Q |
419 |
tgaaatgtgcgtatattgtttatg |
442 |
Q |
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|||||||||||||||||||||||| |
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| T |
38066051 |
tgaaatgtgcgtatattgtttatg |
38066028 |
T |
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