View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17502_low_13 (Length: 301)

Name: NF17502_low_13
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17502_low_13
NF17502_low_13
[»] chr8 (1 HSPs)
chr8 (5-285)||(43970098-43970392)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 285
Target Start/End: Complemental strand, 43970392 - 43970098
Alignment:
Q  5 aaaataaatacgatgaatcaaagtgacaactctataattaggaatcattgtaattagtgtgtgagattaagtgagagattggaagcaaacaatgtgagaa 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43970392 aaaataaatacgatgaatcaaagtgacaactctataattaggaatcattgtaattagtgtgtgagattaagtgagagattggaagcaaacaatgtgagaa 43970293  T
Q  105 ttccttaaagaaatagggaatcaga-gattgt---------------accgtcaacgtagctttgtagtgtgtcgttcattggccaccacagtctccttc 188  Q
    ||||||||||||||||||||||||| | ||||               ||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  43970292 ttccttaaagaaatagggaatcagaggtttgtaccgtcaacaatgcaaccgtcaacgtagctttgtagtgcgtcgttcattggccac--cagtctccttc 43970195  T
Q  189 tttacttacgtctctctattgccacttcagtgtagtgtagttgtcgtagactcaaagtcgtttatactatatacattatttctaaagtattattttt 285  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  43970194 tttatttacgtctctctattgccacttcagtgtagtgtagttgtcgtagacccaaagtcgtttatactatatacattacttctaaagtattattttt 43970098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University