View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_low_15 (Length: 274)
Name: NF17502_low_15
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 38877286 - 38877038
Alignment:
| Q |
12 |
atgaattcacaattaagcatcgtttatgttcggtaaaatcaaagatcttgaagtttaagttcttgatcttaaatttcagtacgttgctattttaagtagt |
111 |
Q |
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| T |
38877286 |
atgaattcacaattaagcatcgtttatgttcggtaaaatcaaagatcttgaagtttaagttcttgatcttaaatttcagtacgttgctattttaagtagt |
38877187 |
T |
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| Q |
112 |
tctgagaatat-taacctctgctttttgaagtttggtttgaggagtcacattgatttcatcagttttcaaaattgtatagtggtgcatctttgagtattc |
210 |
Q |
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| T |
38877186 |
tctgagaatatgtaacctctgctttttgaagtttggtttgaggagtcacattgatttcatcagttttcaaaattgtatagtggtgcatctttgagtattc |
38877087 |
T |
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| Q |
211 |
ttcagtctataagttagtgcatctttgctattgtatagtggtgcatatt |
259 |
Q |
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| T |
38877086 |
ttcagtctataagttagtgcatctttgctattgtatagtggtgcatatt |
38877038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 38584641 - 38584500
Alignment:
| Q |
12 |
atgaattcacaattaagcatcgtttatgttcggtaaaatcaaagatcttgaagtttaagttcttgatcttaaatttcagtacgttgctattttaagtagt |
111 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||| ||| ||||||||||||||| | |
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| T |
38584641 |
atgaattcacaattaagcttcgtttatgttcggtaaaatcagagatctagaagttggagttctcgatcttaaatttcattacattgctattttaagtatt |
38584542 |
T |
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| Q |
112 |
tctgagaatat-taacctctgctttttgaagtttggtttgag |
152 |
Q |
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| T |
38584541 |
tctgagaatatgtaatctctgctttttgaagtttggtttgag |
38584500 |
T |
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