View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_low_22 (Length: 248)
Name: NF17502_low_22
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_low_22 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 31058496 - 31058723
Alignment:
| Q |
18 |
gtgatctctagtatgcctcttgtgtatgaatggatatccagagagaatctgtttttaactttgtattcacaattcacttatgtatcctcatgttggagca |
117 |
Q |
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| T |
31058496 |
gtgatctccagtatgcctcttgtgtatgaatggatatccagagagaatctgtttttaactttgtattcacaattcacttatgtatcctcatgttggagca |
31058595 |
T |
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| Q |
118 |
atagcaacgtctcaacccatcgtgttgtaaattgaaccaaaaacatagttcatagcagaatgatatatatatggaaaagaatacattagaaaggtcaaat |
217 |
Q |
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| T |
31058596 |
atagcaacgtctcaaaccatcgtgttgtaactttaaccaaaaacat-gttcatagcagaatg--atatatatggaaaaaaatacattagaagggtcaaat |
31058692 |
T |
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| Q |
218 |
tcataaaggattctaaccagggaaaatgatt |
248 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
31058693 |
tcataaaggattctaatcagggaaaatgatt |
31058723 |
T |
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