View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_low_28 (Length: 236)
Name: NF17502_low_28
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48255066 - 48255295
Alignment:
| Q |
1 |
tttacaacacttgcatatcttcatggttacattttaaggtaaaatatttaatacatctggtataaagtattttgcaaattaatctaaatttgaaagaaga |
100 |
Q |
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| T |
48255066 |
tttacaacacttgcatatcttcatggttacattttaaggtaaaatatttaatacatctggtataaagcattttgcaaattaatctaaattttaaagaaaa |
48255165 |
T |
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| Q |
101 |
ctatcacataactttgtctatgccttccatctcaaagaatttaacagatgc------tatttggcaatgcttaatatacnnnnnnnnaatca--atatat |
192 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
48255166 |
ctatcacataactctgtctatgtcttccatctcaaagaatttaacagatgctattaatatttggcaatgcttaatatacttttttttaatcaatatatat |
48255265 |
T |
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| Q |
193 |
tcgatgcatgacaattttttaagaattaat |
222 |
Q |
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| T |
48255266 |
ttgatgcatgactattttttaagaattaat |
48255295 |
T |
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