View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_low_29 (Length: 236)
Name: NF17502_low_29
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 40380028 - 40380247
Alignment:
| Q |
1 |
agactttttatttatctaacgatcgaactatggatgcatagtaagagtgtaggtacggtacatgtatgtggatacacaaaatttttaaaaatttaggaca |
100 |
Q |
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| T |
40380028 |
agactttttatttatctaacggtagaattatggatgcatagtaagagtgtaggtacggtacatgtatgtggatacacaaattttttaaaaatttaggaca |
40380127 |
T |
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| Q |
101 |
cgatacaattaaaatatattagtagaatgtttgtaattaaacttatatgccagaaaaaatacttgnnnnnnnntatgaatttatttcttaaattgaatta |
200 |
Q |
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| T |
40380128 |
cgatacaattaaaatatattagtagaatgtttgtaattaaacttgtatg-catataaaatacttgaaaaaaaatatgaatttatttcttaaattgaatca |
40380226 |
T |
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| Q |
201 |
tattcatctctttattgaatt |
221 |
Q |
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| T |
40380227 |
tattcatctctttattgaatt |
40380247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 40390729 - 40390874
Alignment:
| Q |
5 |
tttttatttatctaacgatcgaactatggatgc--atagtaagagtgtaggtacggtacatgtatgtggatacacaaaatttttaaaaatttaggacacg |
102 |
Q |
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| T |
40390729 |
tttttatttacctaacggttgaactatggatgcgtatagtaagagtgtaggtacggtacaggtacgtggataca--aatttttgaaaaatttaggacatg |
40390826 |
T |
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| Q |
103 |
atacaattaaaatatattagtagaatgtttgtaattaaacttatatgc |
150 |
Q |
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| T |
40390827 |
atacgaataaaatacatgaatagaatttttgtaattaaacttgtatgc |
40390874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 42603209 - 42603288
Alignment:
| Q |
70 |
ggatacacaaaatttttaaaaatttaggacacgatacaattaaaatatattagtagaatgtttgtaattaaacttatatgc |
150 |
Q |
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| T |
42603209 |
ggatacacacaatttttaaaa-tttaggatacgctacgattaagatacattaataaattgtttataataaaacttatatgc |
42603288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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