View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17502_low_32 (Length: 226)

Name: NF17502_low_32
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17502_low_32
NF17502_low_32
[»] chr5 (8 HSPs)
chr5 (134-204)||(14368549-14368619)
chr5 (29-97)||(14368613-14368681)
chr5 (96-161)||(13852950-13853015)
chr5 (95-160)||(14398108-14398173)
chr5 (96-160)||(13883392-13883456)
chr5 (157-220)||(16022274-16022337)
chr5 (157-220)||(14389808-14389871)
chr5 (99-160)||(14391953-14392014)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 14368619 - 14368549
Alignment:
Q  134 atctgtttcaatgcaagtttggtgtcatttcatgcttatcatttccacaatccatgagttgaatagaaagt 204  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  14368619 atctgtttcaatgtaagtttggtgtcatttcaagcttatcatttccacaatccatgagttgaatggaaagt 14368549  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 14368681 - 14368613
Alignment:
Q  29 tttccaacacttaagagttagatgctttgtggttatcatggatcttatgttattaaattagtatctgtt 97  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  14368681 tttccaacacttaatagttagatgctttgtggttatcatggttcttgtgttattaaattagtatctgtt 14368613  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 13852950 - 13853015
Alignment:
Q  96 ttacaaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtcat 161  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  13852950 ttacaacaattgacctatagtgaaagtatgtgttctgcatctgtttgaatgcaagtttggtgtcat 13853015  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 14398173 - 14398108
Alignment:
Q  95 gttacaaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtca 160  Q
    |||||||  |||||||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||    
T  14398173 gttacaagaattgacctctagtggaagtatgtgttctgcatctgtttaaatgcaattttggtgtca 14398108  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 13883392 - 13883456
Alignment:
Q  96 ttacaaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtca 160  Q
    ||||||| ||||| ||||||| |||||||||||| | ||||||||| ||||||||||||||||||    
T  13883392 ttacaacaattgatctctagtcaaagtatgtgttcttcatctgtttgaatgcaagtttggtgtca 13883456  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 16022274 - 16022337
Alignment:
Q  157 gtcatttcatgcttatcatttccacaatccatgagttgaatagaaagtatttttggttttggtg 220  Q
    |||| ||||||||| ||||||||||| ||||||||||||||||| ||| | |||||||||||||    
T  16022274 gtcacttcatgcttctcatttccacagtccatgagttgaatagacagtgtctttggttttggtg 16022337  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 14389871 - 14389808
Alignment:
Q  157 gtcatttcatgcttatcatttccacaatccatgagttgaatagaaagtatttttggttttggtg 220  Q
    |||| ||||||||| ||||||||| |||| |||| ||||||||||||| | |||||||||||||    
T  14389871 gtcacttcatgcttttcatttccaaaatcaatgaattgaatagaaagtgtctttggttttggtg 14389808  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 14392014 - 14391953
Alignment:
Q  99 caaccattgacctctagtgaaagtatgtgttatgcatctgtttcaatgcaagtttggtgtca 160  Q
    |||| |||||||||  ||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  14392014 caacaattgacctcgggtgaaagcatgtgttctgcatctgtttgaatgcaattttggtgtca 14391953  T

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