View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_low_34 (Length: 222)
Name: NF17502_low_34
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 4847132 - 4847066
Alignment:
| Q |
143 |
tataaaactaaagttcctaagcaaatggctggaatacttacatagggtttgtggaaatgagatttct |
209 |
Q |
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| T |
4847132 |
tataaaactaaagttcctaagcaaatggctggaatacttacatagggtttgtggaaatgagatttct |
4847066 |
T |
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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 4847469 - 4847402
Alignment:
| Q |
54 |
aatctgaagagaggttaaaatttgctagccaatcaacaca--cgccttcacaccaagtgtgaataact |
119 |
Q |
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| T |
4847469 |
aatctgaagagaggttaaaatttgctagccaatcaacacatctgccttcacaccaagtgtgaataact |
4847402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4847553 - 4847497
Alignment:
| Q |
1 |
atgagtctttgaagctcttcggaaggtgt-ctccatataacaagagatttcaagaat |
56 |
Q |
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| T |
4847553 |
atgagtctttgaagctcttcggaaggtgtcctccatataaccagagatttcaagaat |
4847497 |
T |
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