View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17502_low_5 (Length: 478)

Name: NF17502_low_5
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17502_low_5
NF17502_low_5
[»] chr4 (3 HSPs)
chr4 (1-478)||(47527745-47528222)
chr4 (10-113)||(44983877-44983980)
chr4 (305-410)||(44984156-44984261)


Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 47528222 - 47527745
Alignment:
Q  1 tgtagatagaaaatacccacagcattcaaccagaagttaggaatagatttgatcatctcatcccgcttaatgtaaacgggatctatagtctcatttaact 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528222 tgtagatagaaaatactcacagcattcaaccagaagttaggaatagatttgatcatctcatcccgcttaatgtaaacgggatctatagtctcatttaact 47528123  T
Q  101 tctgctcaatttcacgtagctgatcatattttttgtcattgagctacacaacaactcacaaattcataatcaaaacaacaatgaaatagcaaatcctcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528122 tctgctcaatttcacgtagctgatcatattttttgtcattgagctacacaacaactcacaaattcataatcaaaacaacaatgaaatagcaaatcctcac 47528023  T
Q  201 tcgaggattaaagtcatggtttataacacaggttaaggtaatttgggaatcaaaacattgtgtaagttaatagcttcagttgaatgaataaatgagaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47528022 tcgaggattaaagtcatggtttataacacaggttaaggtaatttggggatcaaaacattgtgtaagttaatagcttcagttgaatgaataaatgagaaaa 47527923  T
Q  301 aagagtacctctgcgaggtcgtcttggattttttgcaaattctcgatggagagggcgagttgtgggtcaacctgtttgggatttctggtaactttctgct 400  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47527922 aagagtacctctgcaaggtcgtcttggattttttgcaaattctcgatggagagggcgagttgtgggtcaacttgtttgggatttctggtaactttctgct 47527823  T
Q  401 tctttgttcttctgatcttcttcgcgtctgtcatgaaacataaaattaactaccatatctaaaataaatcatgtcatt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47527822 tctttgttcttctgatcttcttcgcgtctgtcatgaaacataaaattaactaccttatctaaaataaatcatgtcatt 47527745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 44983877 - 44983980
Alignment:
Q  10 aaaatacccacagcattcaaccagaagttaggaatagatttgatcatctcatcccgcttaatgtaaacgggatctatagtctcatttaacttctgctcaa 109  Q
    ||||||| |||||||||||||||||| | ||||||||||||||| ||||| | |||||||  |||||| || |   || |||||||  ||||||||||||    
T  44983877 aaaatactcacagcattcaaccagaaatcaggaatagatttgataatctcgttccgcttatcgtaaaccggcttcctaatctcattatacttctgctcaa 44983976  T
Q  110 tttc 113  Q
    ||||    
T  44983977 tttc 44983980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 410
Target Start/End: Original strand, 44984156 - 44984261
Alignment:
Q  305 gtacctctgcgaggtcgtcttggattttttgcaaattctcgatggagagggcgagttgtgggtcaacctgtttgggatttctggtaactttctgcttctt 404  Q
    |||||| | ||||||| |||||||| | |||||| |||||||||||||||  |||||  | |||||| | || |||||||  ||| | ||||||||||||    
T  44984156 gtaccttttcgaggtcatcttggatctcttgcaatttctcgatggagaggatgagttcagcgtcaacttcttcgggattttcggtgagtttctgcttctt 44984255  T
Q  405 tgttct 410  Q
     |||||    
T  44984256 ggttct 44984261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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