View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17502_low_7 (Length: 425)
Name: NF17502_low_7
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 45595294 - 45595700
Alignment:
| Q |
1 |
tagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctctcccaagaaaacgacgat |
100 |
Q |
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| T |
45595294 |
tagggataatgaattacaaaattaattcatctgcttaggagagaaagagaggctcacctatctggagaaatggttcttcctctcccaagaaaacgacgat |
45595393 |
T |
|
| Q |
101 |
ggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagcagccatttgcgacgcatg |
200 |
Q |
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| T |
45595394 |
ggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagcagccatttgcgacgcatg |
45595493 |
T |
|
| Q |
201 |
attagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttcaaacaatgctttatcaat |
300 |
Q |
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| T |
45595494 |
attagaaaatggttcaagctcttcaatagatgccaacttttcctgatattagttacatgtagattaaataagaaaccagttcaaacaatgctttatcaat |
45595593 |
T |
|
| Q |
301 |
cttcattcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccc |
400 |
Q |
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| T |
45595594 |
cttcattcaccaagaaacaacaataaagtcttgtaatttctaaccttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccc |
45595693 |
T |
|
| Q |
401 |
catatat |
407 |
Q |
| |
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| T |
45595694 |
catatat |
45595700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 27148951 - 27149117
Alignment:
| Q |
85 |
ccaagaaaacgacgatggccttcaaccgctcgcgccatgttgccagggtaagaatgtacaaatacatcactttcaacagatacaatatagtcaagagcag |
184 |
Q |
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||||||||||| ||||| |||||||| || | |||||||| |||| ||||| ||| |||||||||||| || | ||||||||||||||||||||||| |
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| T |
27148951 |
ccaagaaaacggcgatgaccttcaacagcccttgccatgtttccagaataagagggtataaatacatcactctcgatagatacaatatagtcaagagcag |
27149050 |
T |
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| Q |
185 |
ccatttgcgacgcatgattagaaaatggttcaagctcttcaatagatgccaacttttcctgatatta |
251 |
Q |
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| T |
27149051 |
ccatttgagaagcatgattaaaaaagggttcaagctcctcaatggatgccaacgtttcctgaaatta |
27149117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 27151335 - 27151396
Alignment:
| Q |
343 |
accttgctcattaaaaagggatagcgtgatcgcaattcagtcatatgggattcacccccata |
404 |
Q |
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|||||||||||||| || ||||| || ||||||| ||||| ||||||||| ||||||||||| |
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| T |
27151335 |
accttgctcattaacaatggataacgggatcgcagttcagccatatgggactcacccccata |
27151396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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