View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17502_low_9 (Length: 384)
Name: NF17502_low_9
Description: NF17502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17502_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 47527790 - 47527433
Alignment:
| Q |
11 |
atgaaacataaaattaactaccttatctaaaataaatcatgtcattgaggttatcaatcaactacctttaggcacagcatttaaaccatgttggtgggct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47527790 |
atgaaacataaaattaactaccttatctaaaataaatcatgtcattgaggttatcaatcaactacctttaggcacagcatttaaaccatgttggtgggct |
47527691 |
T |
|
| Q |
111 |
agtttggccattttttcgggaaagacttgattaaccacggcatgcatctcctttacatccaaagtatttgattcaatctttacagcttcctcggtaagct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47527690 |
agtttggccattttttcgggaaagacttgattaaccacggcatgcatctcctttacatccaaagtatttgattcaatctttacagcttcctcggtaagct |
47527591 |
T |
|
| Q |
211 |
tcttcagcatgttgtataaaatattggccgcgaacttcacggcaccgatggagatacttaagtcagggttcaacttcttatgagcagaataaacttgacg |
310 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47527590 |
tcttcagcatgttgtttaaaatattggccgcgaacttcacggcaccgatggagatacttaagtcagggttcaacttcttatgagcagaataaacttgacg |
47527491 |
T |
|
| Q |
311 |
tccaaatggaaaccattcaatctttttgcgtgccttcttctccaccggtggttgttcc |
368 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
47527490 |
tccaaatagaaaccattcaatctttttgcgtgcctttttctccatcggtggttgttcc |
47527433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University