View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17503_high_1 (Length: 487)
Name: NF17503_high_1
Description: NF17503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17503_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 480
Target Start/End: Complemental strand, 41543571 - 41543105
Alignment:
| Q |
14 |
agcagagatagaaaattaaatgactgaatggcacatatggtagcccaaccaatgttccaagcaaagaataggaagaatcataatggaatcatattttatc |
113 |
Q |
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| T |
41543571 |
agcagagatagaaaattaaatgactgaatggcacatatggtagcccaaccaatgttccaagcaaagaataggaagaatcataatggaatcatattttatc |
41543472 |
T |
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| Q |
114 |
actgacatcattatgatatcaatgaagtttgtgaaaacaacagaaggtctcagaagttcagaactcttagatgcatcagggccagggatttgcagcatca |
213 |
Q |
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| T |
41543471 |
actgacatcattatgatatcaatgaagtttgtgaaaacaacagaaggtctcagaagttcagaactcttagatgcatcagggccagggatttgcagcatca |
41543372 |
T |
|
| Q |
214 |
ctggcgataatttgttttatacaaatatacacatcataaaatagtatcacatgtgaaaacaaaactatccagatttttcatataaaattaattccggcag |
313 |
Q |
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| T |
41543371 |
ctggcgataatttgttttatacaaatgtacacatcataaaatagtatcacatgtgaaaacaaaactatccagatttttcatataaaattaattccggcag |
41543272 |
T |
|
| Q |
314 |
aaaagtgcatattccatgattgagtgtgatctcatcaagtacccattccctgcagaaacctacaaaaagtaaaaggaaaataacgacgaaacatggttaa |
413 |
Q |
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| T |
41543271 |
aaaagtgcatattccatgattgagtgtgatctcatcaagtacccattcccggcagaaacctacaaaaagtaaaaggaaaataacgacgaaacatggttaa |
41543172 |
T |
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| Q |
414 |
cttcctatttgaaatgaatattcagcaggagaaacatactataaaaatcagaaaatggttatattca |
480 |
Q |
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| T |
41543171 |
cttcctatttgaaatgaatattcagcaagagaaacatactataaaaatcagataatggttatattca |
41543105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 317 - 464
Target Start/End: Complemental strand, 41559411 - 41559264
Alignment:
| Q |
317 |
agtgcatattccatgattgagtgtgatctcatcaagtacccattccctgcagaaacctacaaaaagtaaaaggaaaataacgacgaaacatggttaactt |
416 |
Q |
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||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||||||||| |
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| T |
41559411 |
agtgcattttccatgattgagtgtgatctcatcacgtacccattcccggcagaaacctacaaaaaaaaaaatgaaagtaacgacgaaacatggttaactt |
41559312 |
T |
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| Q |
417 |
cctatttgaaatgaatattcagcaggagaaacatactataaaaatcag |
464 |
Q |
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| T |
41559311 |
tctatttgaaatgaatatacagcaagaaaaacatactgtaaaaatcag |
41559264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 41559498 - 41559409
Alignment:
| Q |
169 |
gttcagaactcttagatgcatcagggccagggatttgcagcatcactggcgataatttgttttatacaaatatacacatcataaaatagt |
258 |
Q |
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| T |
41559498 |
gttcataacttttagatgcatcagggccagggattcacagtgtgagtggcgataatttgttttatgcaaatgtacacatcataaaatagt |
41559409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 41559600 - 41559531
Alignment:
| Q |
99 |
gaatcatattttatcactgacatcattatgatatcaatgaagtttgtgaaaacaacagaaggtctcagaa |
168 |
Q |
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||||||||||| |||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41559600 |
gaatcatatttcatcattgacattattttgatatcaatgaaatttgtgaaaacaacagaaggtctcagaa |
41559531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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