View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17503_low_4 (Length: 207)
Name: NF17503_low_4
Description: NF17503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17503_low_4 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 25809051 - 25809165
Alignment:
| Q |
1 |
cccacttccaaccccatctctctcatacccagacccccatctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25809051 |
cccacttctaaccccatctctctcatacccagacccccatctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
25809150 |
T |
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| Q |
101 |
cacccacacaggtat |
115 |
Q |
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||||||||||||||| |
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| T |
25809151 |
cacccacacaggtat |
25809165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 25809216 - 25809253
Alignment:
| Q |
166 |
cccaaaatctgagctgtttttcaatttcttttgatact |
203 |
Q |
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||||||||||||||||||| |||||||||| ||||||| |
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| T |
25809216 |
cccaaaatctgagctgtttgtcaatttcttgtgatact |
25809253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 135715 - 135829
Alignment:
| Q |
1 |
cccacttccaaccccatctctctcatacccagacccccatctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135715 |
cccacttctaaccccatctctctcatacccagacccccatctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
135814 |
T |
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| Q |
101 |
cacccacacaggtat |
115 |
Q |
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||||||||||||||| |
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| T |
135815 |
cacccacacaggtat |
135829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 135880 - 135917
Alignment:
| Q |
166 |
cccaaaatctgagctgtttttcaatttcttttgatact |
203 |
Q |
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||||||||||||||||||||||||||| || ||||||| |
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| T |
135880 |
cccaaaatctgagctgtttttcaattttttgtgatact |
135917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 23068364 - 23068250
Alignment:
| Q |
1 |
cccacttccaaccccatctctctcatacccagacccccatctcattgaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23068364 |
cccacttctaaccccatctctctcatacccagacccccatctaattaaactccacttctcacaacccattgaacccatctctcatctcattacaagcatg |
23068265 |
T |
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| Q |
101 |
cacccacacaggtat |
115 |
Q |
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|
||||||||||||||| |
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| T |
23068264 |
cacccacacaggtat |
23068250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 23068199 - 23068162
Alignment:
| Q |
166 |
cccaaaatctgagctgtttttcaatttcttttgatact |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
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| T |
23068199 |
cccaaaatctgagctgtttttcaatttcttgtgatact |
23068162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 39 - 115
Target Start/End: Original strand, 20746369 - 20746446
Alignment:
| Q |
39 |
atctcattgaactccacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtat |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| |
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| T |
20746369 |
atctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtat |
20746446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 195
Target Start/End: Original strand, 20746498 - 20746527
Alignment:
| Q |
166 |
cccaaaatctgagctgtttttcaatttctt |
195 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20746498 |
cccaaaatctgagctgtttttcaatttctt |
20746527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 26909178 - 26909102
Alignment:
| Q |
40 |
tctcattgaactccacttctcacaacccattgaa-cccatctctcatctcattacaagcatgcacccacacaggtat |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| |
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| T |
26909178 |
tctcattgaactccacttctcacaacccattgaaccccatctctcatctaatcccacgcatgcacccacacaggtat |
26909102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 26909050 - 26909014
Alignment:
| Q |
166 |
cccaaaatctgagctgtttttcaatttcttttgatac |
202 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
26909050 |
cccaaaatctgagctgtttttcaatttcttgtgatac |
26909014 |
T |
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