View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17504_high_9 (Length: 227)
Name: NF17504_high_9
Description: NF17504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17504_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 35614623 - 35614811
Alignment:
| Q |
15 |
atccctcttgacatatattttttattttcaaaactcaacatctcgatccttccttttaataaaaatgctctcgatccttcgtttagaaagcaagctcttt |
114 |
Q |
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| T |
35614623 |
atccctcttgacatctattttttattttcaaaactcaatatctcgattcttctttttattaaaaatgctctccatccttcttttagaaagcaagctcttc |
35614722 |
T |
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| Q |
115 |
cac---ttacttatactttatatgtatttttaaaatcgtaatactatgttttgaactgttctcatgtcacttatagtaacaaacttaaa |
200 |
Q |
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| T |
35614723 |
cacacattacttatactttatatgtatttttaaaatcgtaatactaggttttgaactgttctcatgtcacttatagtaacaaacttaaa |
35614811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 35614848 - 35614876
Alignment:
| Q |
197 |
taaataaaataaaacaaagaatgagatgt |
225 |
Q |
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| T |
35614848 |
taaataaaataaaacaaagaatgagatgt |
35614876 |
T |
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