View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17504_low_1 (Length: 552)
Name: NF17504_low_1
Description: NF17504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17504_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 8 - 525
Target Start/End: Complemental strand, 9616175 - 9615658
Alignment:
| Q |
8 |
cgaagaaaatgcctaaaggagacccaattagagttcttacattgagtgttgaatggccaattagaggtcttacattgagcgagttgttaaaaaatgatac |
107 |
Q |
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| T |
9616175 |
cgaacaaaatgcctaaaggagacccaatcagagttcttacattgagtgttgaatggccaattagagttcttacattgagcgagttgtttaaaaatgata- |
9616077 |
T |
|
| Q |
108 |
ttgcatagtggaaccactagacaaactagggtggattatagtgtatatgatgctcttgttcttggaaaatttccatcaacaag---tataaacccannnn |
204 |
Q |
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| T |
9616076 |
ttgcatagtggaaccactagacaaactagggtggattatagtgtatatgatgctcttgttcttggaaaatttccatcaacaagaagtataaacccatttt |
9615977 |
T |
|
| Q |
205 |
nnnnnagcattgaaatgaaacgagattatgctaatgattattttatcaatggcatattgtttaattccttatcgttgaattcctttcactcatatgattc |
304 |
Q |
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| T |
9615976 |
ttt--agcattgaaatgaagcttgagtatgctaatgattattttatcaatggcatattgtttaattccttatcgttgaattcctttcactcatatgattc |
9615879 |
T |
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| Q |
305 |
cacagtccacacacttgcaattgtgttcaaagaattatattatctcttgtgcgtgaatgagaataatataatattattttctcttattgggtaatattat |
404 |
Q |
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| T |
9615878 |
cacagtccacacacttgcaattgtgttcaaagaattatattatctcttgtgcgtgaatgagaataatataatattattttctcttattgggtaatattat |
9615779 |
T |
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| Q |
405 |
tgttgtctccttcgtgtactgtttatattaggttgatttagccaatgaataattttcgtacatgaaaggacgttaactaatttaaaattttatgctttca |
504 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9615778 |
tgttgtctccttcgtgtactttttaaattaggttgatttagccaatgaataattttcgtacatgaaaggacgttaactaatttaaaattttatgctttca |
9615679 |
T |
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| Q |
505 |
tttattttagggtctcgagtt |
525 |
Q |
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| T |
9615678 |
tttattttagggtttcgagtt |
9615658 |
T |
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