View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17504_low_2 (Length: 486)

Name: NF17504_low_2
Description: NF17504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17504_low_2
NF17504_low_2
[»] chr2 (2 HSPs)
chr2 (18-466)||(42027592-42028040)
chr2 (18-252)||(34040020-34040254)
[»] chr3 (5 HSPs)
chr3 (18-324)||(43102678-43102984)
chr3 (262-466)||(54653479-54653683)
chr3 (253-450)||(13077465-13077662)
chr3 (265-466)||(51825128-51825329)
chr3 (197-466)||(47807225-47807492)
[»] chr7 (4 HSPs)
chr7 (253-466)||(19278742-19278955)
chr7 (262-406)||(27308233-27308377)
chr7 (336-392)||(23484594-23484650)
chr7 (360-418)||(38645464-38645522)
[»] chr1 (1 HSPs)
chr1 (278-466)||(3978840-3979028)
[»] chr4 (3 HSPs)
chr4 (253-453)||(26788928-26789129)
chr4 (278-466)||(3217138-3217326)
chr4 (284-348)||(44502975-44503039)
[»] chr5 (3 HSPs)
chr5 (197-462)||(10085297-10085561)
chr5 (266-404)||(1663996-1664134)
chr5 (262-311)||(27893375-27893424)
[»] chr8 (1 HSPs)
chr8 (337-401)||(42193494-42193558)


Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 466
Target Start/End: Complemental strand, 42028040 - 42027592
Alignment:
Q  18 ctatcagatgcacaggttctcacaaaataaatgagaatggccaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatccccaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||    
T  42028040 ctatcagatgcacaggttctcacaaaataaatgagaatggcaaaatgaaaactactcccctaacaatttaagtgattttttcattgaacatcccctaaca 42027941  T
Q  118 atttctacagcattgtgttgtgttgcatagatgatttccggtgcggttgcagcactgtgttgtttttctatggttcataagtttttgcagaaattaagca 217  Q
    |||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  42027940 atttctacagcactgtgttgtgttgcgtagatgatttccggcgtggttgcagcactgtgttgtttttccatggttcataagtttttgcagaaattaagcg 42027841  T
Q  218 gtggttgctggcgtggacgtagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatg 317  Q
    ||||| || |||| || |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42027840 gtggtcgccggcggggtcgtagtagtttccgacgcggtggtcgtcggtgaaagtttttcgatcccaaaataaatttagggattttgttgcagacattatg 42027741  T
Q  318 gggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatct 417  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || |||| ||||||||||||||||||||||    
T  42027740 gggaagaagaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtgatgcttagggtttttaaaattttaccaatct 42027641  T
Q  418 aataatatgtttgtggttttttgaagaggaagatgaaagtagttcaatg 466  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42027640 aataatatgtttgtggttttttgaagaggaagatgagagtagttcaatg 42027592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 34040020 - 34040254
Alignment:
Q  18 ctatcagatgcacaggttctcacaaaataaatgagaatggccaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatccccaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34040020 ctatcagatgcacaggttctcacaaaataaatgagaatggcaaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatcccctaaca 34040119  T
Q  118 atttctacagcattgtgttgtgttgcatagatgatttccggtgcggttgcagcactgtgttgtttttctatggttcataagtttttgcagaaattaagca 217  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||     
T  34040120 atttctacagcactgtgttgtgttgcgtagatgatttccggcgcggttgcagcactgtgttgtttttccatggttcataaatttttgcagaaattaagcg 34040219  T
Q  218 gtggttgctggcgtggacgtagtagtttctgacgt 252  Q
    | |||||| |||| || || | ||||||| |||||    
T  34040220 gaggttgccggcggggtcgcaatagtttccgacgt 34040254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 43102678 - 43102984
Alignment:
Q  18 ctatcagatgcacaggttctcacaaaataaatgagaatggccaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatccccaaaca 117  Q
    |||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43102678 ctatcaaatgcacaagttctcacaaaatcaatgagaatggcaaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatcccctaaca 43102777  T
Q  118 atttctacagcattgtgttgtgttgcatagatgatttccggtgcggttgcagcactgtgttgtttttctatggttcataagtttttgcagaaattaagca 217  Q
    |||||||||||||||||||||||||| |||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |    
T  43102778 atttctacagcattgtgttgtgttgcgtagatgatttccggcgctgttgcaacactgtgttgtttttccatggttcataagtttttgcagaaattaagta 43102877  T
Q  218 gtggttgctggcgtggacgtagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatg 317  Q
    ||||| || |||| || || | ||||||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43102878 gtggtcgccggcgaggtcgcactagtttccgacgcggtgatcgtcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatg 43102977  T
Q  318 gggaaga 324  Q
    |||||||    
T  43102978 gggaaga 43102984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 262 - 466
Target Start/End: Original strand, 54653479 - 54653683
Alignment:
Q  262 cggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatgg 361  Q
    ||||||||||| | | ||||||||||| || ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |||    
T  54653479 cggtgaaagttctccaatcccaaaatagatgtaggggttttgttgcagacatcatgtgtaagaagaaaatcatattagtttttcaaatggagatttgtgg 54653578  T
Q  362 tggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagtt 461  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| |||||||| |||||||||| |||||||    
T  54653579 tggctgaaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaataggaagatgagagtagtt 54653678  T
Q  462 caatg 466  Q
    |||||    
T  54653679 caatg 54653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 253 - 450
Target Start/End: Original strand, 13077465 - 13077662
Alignment:
Q  253 ggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatgga 352  Q
    |||||||  ||||||||||| | |||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||    
T  13077465 ggtggtcgccggtgaaagttctccgatcccaaaataaatatatgggttttgttgcagacatgatggggaagaataaaatcatattagttttttgaatgga 13077564  T
Q  353 gatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaaga 450  Q
    |||||  |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||    
T  13077565 gatttgcggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaaga 13077662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 265 - 466
Target Start/End: Original strand, 51825128 - 51825329
Alignment:
Q  265 tgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtgg 364  Q
    ||||| || ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  51825128 tgaaatttcttcgaccccaaaataaatataggggttttgttgcagacataatgaggaagaagaaaatcatattagtttttcaaatggagatttgtggtgg 51825227  T
Q  365 ccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaa 464  Q
    | | ||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||  ||  ||  ||||||||||||||||| | ||||||||||    
T  51825228 ctggaaagtaagagagaaggtgggggttagggtttttaaaatcttatcaatctaataataacttgatgcctttttgaagaggaagataagagtagttcaa 51825327  T
Q  465 tg 466  Q
    ||    
T  51825328 tg 51825329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 197 - 466
Target Start/End: Complemental strand, 47807492 - 47807225
Alignment:
Q  197 agtttttgcagaaattaagcagtggttgctggcgtggacgtagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttagg 296  Q
    |||||||||| ||||||||| ||||| || |||| ||  | || |||||| | || |||||||  ||| ||||||| |||||||||||||||||| || |    
T  47807492 agtttttgcataaattaagcggtggt-gccggcgcggttgcagcagtttccggcgcggtggtcgccggcgaaagttcttcgatcccaaaataaatatacg 47807394  T
Q  297 ggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggttagag 396  Q
    ||||||||||||||||| |   | ||||||||||||||||||||||||||||| ||||| | ||||||||| ||||| |||||||||||||||||||| |    
T  47807393 ggttttgttgcagacatcacatgaaagaagaaaatcatattagtttttcaaatcgagatatgtggtggccggaaagtgagagagaaggtggtggttaggg 47807294  T
Q  397 tttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaatg 466  Q
    |||||||||| ||| ||||||||||||| ||| |||  |||| |||||||||||||| ||||||||||||    
T  47807293 tttttaaaatctta-caatctaataataagttggtgccttttcgaagaggaagatgagagtagttcaatg 47807225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 253 - 466
Target Start/End: Complemental strand, 19278955 - 19278742
Alignment:
Q  253 ggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatgga 352  Q
    |||||||  ||||||||||| | | ||||||||||| || |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  19278955 ggtggtcgccggtgaaagttctccaatcccaaaatagatgtaggagttttgttgcagacatcatgggtaagaagaaaatcatattagtttttcaaatgga 19278856  T
Q  353 gatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatg 452  Q
    ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||    
T  19278855 gatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatg 19278756  T
Q  453 aaagtagttcaatg 466  Q
    | ||||||||||||    
T  19278755 agagtagttcaatg 19278742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 406
Target Start/End: Original strand, 27308233 - 27308377
Alignment:
Q  262 cggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatgg 361  Q
    ||||||||||| ||| ||||| |||||||||  ||||||||||||  ||||| |||||||||| ||| || |  |||||||||||||  ||||   ||||    
T  27308233 cggtgaaagttcttcaatcccgaaataaattggggggttttgttgttgacatcatggggaagatgaatattaatttagtttttcaaaatgagacccatgg 27308332  T
Q  362 tggccgaaaagtaagagagaaggtggtggttagagtttttaaaat 406  Q
    ||||||||||    || |||||||||||||| ||| |||| ||||    
T  27308333 tggccgaaaatggggaaagaaggtggtggttggagattttgaaat 27308377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 23484594 - 23484650
Alignment:
Q  336 ttagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggtt 392  Q
    ||||||| |||||||| | || | |||||||| ||||||||||||||||||||||||    
T  23484594 ttagtttctcaaatggtggttcaaggtggccggaaagtaagagagaaggtggtggtt 23484650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 38645522 - 38645464
Alignment:
Q  360 ggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatcta 418  Q
    ||||||||||||||||||||||| ||||| ||| | |||||| ||| || |||||||||    
T  38645522 ggtggccgaaaagtaagagagaatgtggtagttggggtttttgaaacttcaccaatcta 38645464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 278 - 466
Target Start/End: Original strand, 3978840 - 3979028
Alignment:
Q  278 atcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaaga 377  Q
    ||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||    
T  3978840 atcccaaaatagatgtaggggttttgttgcagacatcatgggtaagaagaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtagga 3978939  T
Q  378 gagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaatg 466  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||    
T  3978940 gagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagtagttcaatg 3979028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 253 - 453
Target Start/End: Complemental strand, 26789129 - 26788928
Alignment:
Q  253 ggtggtcttcggtgaaagtttttcgatcccaaaa-taaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatgg 351  Q
    ||||||| ||| |||||||| | ||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||    
T  26789129 ggtggtcgtcgatgaaagttatccgatcccaaaaataaatataggggttttgttgcagacataatggagaagaagaaaatcatattaatttttcaaacgg 26789030  T
Q  352 agatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagat 451  Q
    |||||| ||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  26789029 agatttgtggtggccggaaaataagagagaaggtggcggttagggtttttaaaattttaccaatctaataataagttggtggctttttgaagaggaagat 26788930  T
Q  452 ga 453  Q
    ||    
T  26788929 ga 26788928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 278 - 466
Target Start/End: Original strand, 3217138 - 3217326
Alignment:
Q  278 atcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaaga 377  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||    
T  3217138 atcccaaaataaatataggggttttgttgcaaacattatggggaagaagaaaatcatattagtttttcaaatagagatttgtggtggccggaaaataaga 3217237  T
Q  378 gagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaatg 466  Q
    |||||||||   ||||| ||||||||||| ||| ||||||||||||| ||| |||  ||||||||||||||||| | ||||||||||||    
T  3217238 gagaaggtgagagttagggtttttaaaatcttaacaatctaataataagttggtgcctttttgaagaggaagataagagtagttcaatg 3217326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 44502975 - 44503039
Alignment:
Q  284 aaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaa 348  Q
    ||||||| ||||||||||||||| ||| ||||||||||| ||||| ||||  ||||||| |||||    
T  44502975 aaataaacttaggggttttgttgaagaaattatggggaataagaatatcaatttagtttctcaaa 44503039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 197 - 462
Target Start/End: Original strand, 10085297 - 10085561
Alignment:
Q  197 agtttttgcagaaattaagcagtggttgctggcgtggacgtagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttagg 296  Q
    ||||||||||||||||||||  ||||  | |||||||  | || |||||| | ||| ||||||  ||||||||||| |  ||||||||||||||| ||||    
T  10085297 agtttttgcagaaattaagcgatggtcaccggcgtggttgcagcagtttccggcgtagtggtcgccggtgaaagttctctgatcccaaaataaatatagg 10085396  T
Q  297 ggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtg-gtggttaga 395  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||| | | ||||     
T  10085397 g-ttttgttgcagacatcatggggaagaagaaaatcatattagtttttcaaataaagatttgtggtggccggaaagtaagagagaaggtgagagtttag- 10085494  T
Q  396 gtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttc 462  Q
    |||||| |||| ||| ||||||||||||| ||| |||  |||||||||||||| || | ||||||||    
T  10085495 gttttttaaatcttaacaatctaataataagttggtgcctttttgaagaggaatataagagtagttc 10085561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 266 - 404
Target Start/End: Original strand, 1663996 - 1664134
Alignment:
Q  266 gaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggc 365  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||| |||| |     
T  1663996 gaaagttcttcgatcccaaaataaatataggggttttgttgcagacatcacagggaagaagaaaatcatattagtttttcaaattgagatttgtggtagt 1664095  T
Q  366 cgaaaagtaagagagaaggtggtggttagagtttttaaa 404  Q
    || |||||||||||||||||||||||||  |||||||||    
T  1664096 cggaaagtaagagagaaggtggtggttatggtttttaaa 1664134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 27893424 - 27893375
Alignment:
Q  262 cggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagac 311  Q
    ||||||||||| | ||||||||||||| || | |||||||||||||||||    
T  27893424 cggtgaaagttctccgatcccaaaatatatattggggttttgttgcagac 27893375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 337 - 401
Target Start/End: Complemental strand, 42193558 - 42193494
Alignment:
Q  337 tagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggttagagttttt 401  Q
    |||||||||| |||| | |  |||||||| | |||||||||||||||||||||||| | ||||||    
T  42193558 tagtttttcagatggtggtccatggtggctggaaagtaagagagaaggtggtggttggggttttt 42193494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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